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GeneE
1 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
H2AC16
H2A clustered histone 16
Chromosome 6 Β· 6p22.1
NCBI Gene: 8332Ensembl: ENSG00000196747.5HGNC: HGNC:4725UniProt: A4FTV9
36PubMed Papers
20Diseases
0Drugs
1Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
βœ“ Swiss-Prot Reviewed
viral diseaseinfectious diseasedengue diseasehepatocellular carcinoma
✦AI Summary

H2AC16 (H2A clustered histone 16) is a histone H2A variant encoded on chromosome 6. Based on limited published evidence, H2AC16 belongs to the core histone family and is a structural component of nucleosomes. A germline variant in H2AC16 was identified in one unpublished individual with a rare neurodevelopmental disorder (histonopathy), representing the first known disease association for this gene 1. The clinical features and functional consequences of H2AC16 mutations remain largely uncharacterized.

Sources cited
1
H2AC16 harbors a germline variant associated with a neurodevelopmental histonopathy disorder in one individual; first disease association reported for this gene
PMID: 40241305
⚠Limited data available β€” This gene has 1 indexed publication. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
infectious diseaseOpen Targets
0.50Moderate
viral diseaseOpen Targets
0.50Moderate
dengue diseaseOpen Targets
0.37Weak
hepatocellular carcinomaOpen Targets
0.09Suggestive
metabolic syndromeOpen Targets
0.07Suggestive
breast carcinomaOpen Targets
0.07Suggestive
neoplasmOpen Targets
0.07Suggestive
liver cancerOpen Targets
0.06Suggestive
actinic keratosisOpen Targets
0.05Suggestive
sebaceous of Jadassohn nevusOpen Targets
0.04Suggestive
squamous cell carcinomaOpen Targets
0.04Suggestive
Nijmegen breakage syndromeOpen Targets
0.04Suggestive
cancerOpen Targets
0.02Suggestive
major depressive disorderOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.02Suggestive
non-small cell lung carcinomaOpen Targets
0.02Suggestive
diffuse large B-cell lymphomaOpen Targets
0.02Suggestive
Huntington diseaseOpen Targets
0.02Suggestive
systemic lupus erythematosusOpen Targets
0.02Suggestive
neuroblastomaOpen Targets
0.01Suggestive
Pathogenic Variants1
NM_003511.3(H2AC16):c.44C>G (p.Ala15Gly)Likely pathogenic
Multiple myeloma
β˜†β˜†β˜†β˜†2019β†’ Residue 15
View on ClinVar β†—
Related Genes
H2AC8Protein interaction100%H3-3BProtein interaction100%H3C13Protein interaction100%CENPAProtein interaction100%KMT5AProtein interaction100%H2BC21Protein interaction100%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
77%
Lung
17%
Ovary
6%
Heart
0%
Liver
0%
Gene Interaction Network
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H2AC16H2AC8H3-3BH3C13CENPAKMT5AH2BC21
PROTEIN STRUCTURE
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AlphaFoldAI-predicted Β· UniProt P0C0S8
View on AlphaFold β†—
RankingsWhere H2AC16 stands among ~20K protein-coding genes
  • #10,787of 20,598
    Most Researched36
  • #5,202of 5,498
    Most Pathogenic Variants1
Genes detectedH2AC16
Sources retrieved1 papers
Response timeβ€”
πŸ“„ Sources
1
1
Coupling deep phenotypic quantification with next-generation phenotyping for 192 individuals with germline histonopathies.
PMID: 40241305
HGG Adv Β· 2025
1.00