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GeneE
8 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
H4C5
H4 clustered histone 5
Chromosome 6 Β· 6p22.2
NCBI Gene: 8367Ensembl: ENSG00000158406.6HGNC: HGNC:20510UniProt: P62805
128PubMed Papers
20Diseases
0Drugs
9Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
βœ“ Swiss-Prot Reviewed
infectious diseaseviral diseaseTessadori-Van Haaften neurodevelopmental syndrome 3cancer
✦AI Summary

H4C5 encodes histone H4, a core component of nucleosomes that organizes DNA and supports essential cellular processes including DNA replication, transcription, and repair 1. As one of fourteen canonical H4 genes in humans, H4C5 produces an invariant histone protein despite nucleotide-level variation across family members 1. De novo missense variants in H4C5 cause a neurodevelopmental syndrome characterized by intellectual disability and developmental delay, with variable features including microcephaly, short stature, and facial dysmorphisms 21. These pathogenic variants cluster in the H4 core globular domain and C-terminal tail where protein-protein interactions occur with other histones and histone chaperones 1. At least seven disease-causing H4C5 missense variants have been identified 2. Functional studies in zebrafish embryos demonstrated that H4 variants cause abnormal development, defective head organs, and reduced body axis length, confirming causality 1. Recent research identified H4C5 as a component of a urine biomarker panel for prostate cancer detection, where it demonstrated diagnostic value alongside TTC3 and EPCAM 3. The clinical significance of this finding requires further investigation to distinguish its role in cancer biology from its primary histone function.

Sources cited
1
H4C5 is one of fourteen canonical histone H4 genes; de novo missense variants cause neurodevelopmental syndrome with intellectual disability and developmental delay; variants cluster in the H4 core domain; zebrafish functional studies confirm causality
PMID: 35202563
2
H4C5 missense variant (p.Tyr99His) identified in a patient with neurodevelopmental phenotype overlapping Angelman syndrome; at least seven disease-causing H4C5 missense variants are known
PMID: 36987712
3
H4C5 identified as a urinary RNA biomarker for prostate cancer detection in a three-biomarker panel with high diagnostic accuracy
PMID: 40903311
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
infectious diseaseOpen Targets
0.50Moderate
viral diseaseOpen Targets
0.50Moderate
Tessadori-Van Haaften neurodevelopmental syndrome 3Open Targets
0.46Moderate
cancerOpen Targets
0.38Weak
melanomaOpen Targets
0.37Weak
breast carcinomaOpen Targets
0.37Weak
dengue diseaseOpen Targets
0.37Weak
posterior cortical atrophyOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.06Suggestive
Familial exudative vitreoretinopathyOpen Targets
0.04Suggestive
neoplasmOpen Targets
0.04Suggestive
exfoliation syndromeOpen Targets
0.04Suggestive
Familial ocular anterior segment mesenchymal dysgenesisOpen Targets
0.04Suggestive
acute respiratory distress syndromeOpen Targets
0.03Suggestive
snowflake vitreoretinal degenerationOpen Targets
0.03Suggestive
Coats diseaseOpen Targets
0.03Suggestive
isolated congenital megalocorneaOpen Targets
0.03Suggestive
megalocorneaOpen Targets
0.03Suggestive
Norrie diseaseOpen Targets
0.03Suggestive
exudative vitreoretinopathy 2, X-linkedOpen Targets
0.03Suggestive
Pathogenic Variants9
NM_003545.4(H4C5):c.295T>C (p.Tyr99His)Pathogenic
Tessadori-Van Haaften neurodevelopmental syndrome 3|not specified
β˜…β˜…β˜†β˜†2025β†’ Residue 99
NM_003545.4(H4C5):c.98C>T (p.Pro33Leu)Likely pathogenic
not provided|not specified
β˜…β˜…β˜†β˜†2023β†’ Residue 33
NM_003545.4(H4C5):c.121C>T (p.Arg41Cys)Pathogenic
not provided
β˜…β˜†β˜†β˜†2024β†’ Residue 41
NM_003545.4(H4C5):c.81C>G (p.Ile27Met)Likely pathogenic
Tessadori-Van Haaften neurodevelopmental syndrome 3
β˜…β˜†β˜†β˜†2024β†’ Residue 27
NM_003545.4(H4C5):c.232A>C (p.Lys78Gln)Likely pathogenic
H4C5-related disorder
β˜…β˜†β˜†β˜†2023β†’ Residue 78
NM_003545.4(H4C5):c.110G>C (p.Arg37Pro)Likely pathogenic
not specified
β˜…β˜†β˜†β˜†2023β†’ Residue 37
NM_003545.4(H4C5):c.95A>C (p.Lys32Thr)Pathogenic
Tessadori-Van Haaften neurodevelopmental syndrome 3
β˜†β˜†β˜†β˜†2023β†’ Residue 32
NM_003545.4(H4C5):c.98C>G (p.Pro33Arg)Pathogenic
Tessadori-Van Haaften neurodevelopmental syndrome 3
β˜†β˜†β˜†β˜†2023β†’ Residue 33
NM_003545.4(H4C5):c.106C>T (p.Arg36Trp)Pathogenic
Tessadori-Van Haaften neurodevelopmental syndrome 3
β˜†β˜†β˜†β˜†2023β†’ Residue 36
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Related Genes
H3C12Protein interaction100%CENPAProtein interaction100%H2BC12Protein interaction100%H2BC11Protein interaction99%H2AC21Protein interaction98%H3C7Protein interaction98%
Tissue Expression6 tissues
Brain
100%
Liver
67%
Lung
67%
Ovary
67%
Bone Marrow
0%
Heart
0%
Gene Interaction Network
Click a node to explore
H4C5H3C12CENPAH2BC12H2BC11H2AC21H3C7
PROTEIN STRUCTURE
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AlphaFoldAI-predicted Β· UniProt P62805
View on AlphaFold β†—
RankingsWhere H4C5 stands among ~20K protein-coding genes
  • #3,654of 20,598
    Most Researched128 Β· top quartile
  • #2,933of 5,498
    Most Pathogenic Variants9
Genes detectedH4C5
Sources retrieved8 papers
Response timeβ€”
πŸ“„ Sources
8β–Ό
1
Recurrent de novo missense variants across multiple histone H4 genes underlie a neurodevelopmental syndrome.
PMID: 35202563
Am J Hum Genet Β· 2022
1.00
2
A sensitive and specific non-invasive urine biomarker panel for prostate cancer detection.
PMID: 40903311
EBioMedicine Β· 2025
0.88
3
H4C5 missense variant leads to a neurodevelopmental phenotype overlapping with Angelman syndrome.
PMID: 36987712
Am J Med Genet A Β· 2023
0.75
4
Rapid cytotoxicity of human B lymphocytes induced by VH4-34 (VH4.21) gene-encoded monoclonal antibodies.
PMID: 8697629
Clin Exp Immunol Β· 1996
0.63
5
Human antilipid A monoclonal antibodies bind to human B cells and the i antigen on cord red blood cells.
PMID: 7691963
J Immunol Β· 1993
0.50