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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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HACD2
3-hydroxyacyl-CoA dehydratase 2
Chromosome 3 · 3q21.1
NCBI Gene: 201562Ensembl: ENSG00000206527.11HGNC: HGNC:9640UniProt: Q6Y1H2
49PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein tyrosine phosphatase activityprotein binding3-hydroxyacyl-CoA dehydratase activityenzyme bindingsmoking initiationobesitysinusitiscorneal neovascularization
✦AI Summary

HACD2 (3-hydroxyacyl-CoA dehydratase 2) catalyzes the dehydration step of very long-chain fatty acid (VLCFA) elongation in the endoplasmic reticulum, converting 3-hydroxyacyl-CoA intermediates to trans-2,3-enoyl-CoA 1. HACD1 and HACD2 exhibit functional redundancy as the major 3-hydroxyacyl-CoA dehydratases, participating in saturated and polyunsaturated FA elongation pathways, with HACD2 being the predominant enzyme 2. HACD2 forms a stable complex with trans-2-enoyl-CoA reductase (TECR) to facilitate substrate transfer during VLCFA synthesis 1. Beyond canonical lipid metabolism, HACD2 exhibits non-enzymatic functions in cancer progression. In pancreatic cancer, HACD2 promotes cell proliferation in a dehydratase-independent manner by binding parkin (PRKN) and enhancing PKM2 dissociation, reducing PKM2 ubiquitination and increasing dimerization to promote c-Myc expression 3. HACD2 has been identified as a dysplasia-associated gene with malignant transformation potential in oral squamous cell carcinoma 4 and as a prognostic gene in hepatocellular carcinoma risk models 5. Additionally, baseline HACD2 expression in white adipose tissue is lower in women with long-term weight loss, linking it to metabolic regulation and obesity 6. A locus near HACD2 associates with habitual sleep duration across multiple ancestry populations 7.

Sources cited
1
HACD2 catalyzes dehydration in VLCFA elongation and forms a stable complex with TECR for substrate transfer
PMID: 38422897
2
HACD1 and HACD2 exhibit functional redundancy as major 3-hydroxyacyl-CoA dehydratases in saturated and polyunsaturated FA elongation
PMID: 28784662
3
HACD2 promotes pancreatic cancer cell proliferation through dehydratase-independent interactions with PRKN and PKM2
PMID: 39836601
4
HACD2 identified as a dysplasia-associated gene with malignant transformation potential in oral squamous cell carcinoma
PMID: 40525754
5
HACD2 is a prognostic gene in hepatocellular carcinoma risk models related to TET1 expression
PMID: 37181808
6
Lower baseline HACD2 expression in white adipose tissue associates with long-term weight loss in women
PMID: 31164724
7
A locus near HACD2 associates with habitual sleep duration across multiple ancestry populations
PMID: 37384397
Disease Associationsⓘ20
smoking initiationOpen Targets
0.30Weak
obesityOpen Targets
0.29Weak
sinusitisOpen Targets
0.29Weak
corneal neovascularizationOpen Targets
0.29Weak
type 2 diabetes mellitusOpen Targets
0.28Weak
CachexiaOpen Targets
0.12Weak
Abnormality of the gastrointestinal tractOpen Targets
0.08Suggestive
exostosisOpen Targets
0.07Suggestive
facial morphologyOpen Targets
0.07Suggestive
pachyonychia congenitaOpen Targets
0.05Suggestive
neoplasmOpen Targets
0.03Suggestive
short stature due to GHSR deficiencyOpen Targets
0.03Suggestive
skin diseaseOpen Targets
0.02Suggestive
poisoningOpen Targets
0.02Suggestive
mitochondrial diseaseOpen Targets
0.01Suggestive
nasopharyngeal carcinomaOpen Targets
0.01Suggestive
esophageal squamous cell carcinomaOpen Targets
0.01Suggestive
Glucose intoleranceOpen Targets
0.01Suggestive
hepatocellular carcinomaOpen Targets
0.01Suggestive
acute quadriplegic myopathyOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HACD1Protein interaction100%FADS1Protein interaction100%SCDProtein interaction100%SCD5Protein interaction100%HACD4Protein interaction92%TECRProtein interaction84%
Tissue Expression6 tissues
Brain
100%
Liver
85%
Heart
47%
Bone Marrow
43%
Lung
36%
Ovary
28%
Gene Interaction Network
Click a node to explore
HACD2HACD1FADS1SCDSCD5HACD4TECR
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q6Y1H2
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.94LoF Tolerant
pLIⓘ
0.31Tolerant
Observed/Expected LoF0.41 [0.20–0.94]
RankingsWhere HACD2 stands among ~20K protein-coding genes
  • #8,950of 20,598
    Most Researched49
  • #8,756of 17,882
    Most Constrained (LOEUF)0.94
Genes detectedHACD2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
HACD2 Promotes Pancreatic Cancer Progression by Enhancing PKM2 Dissociation From PRKN in a Dehydratase-Independent Manner.
PMID: 39836601
Adv Sci (Weinh) · 2025
1.00
2
The 3-hydroxyacyl-CoA dehydratase 1/2 form complex with trans-2-enoyl-CoA reductase involved in substrates transfer in very long chain fatty acid elongation.
PMID: 38422897
Biochem Biophys Res Commun · 2024
0.90
3
The 3-hydroxyacyl-CoA dehydratases HACD1 and HACD2 exhibit functional redundancy and are active in a wide range of fatty acid elongation pathways.
PMID: 28784662
J Biol Chem · 2017
0.80
4
Spatial Transcriptomic Landscape of Canine Oral Squamous Cell Carcinoma.
PMID: 40525754
Mol Carcinog · 2025
0.70
5
Multi-ancestry genome-wide analysis identifies shared genetic effects and common genetic variants for self-reported sleep duration.
PMID: 37384397
Hum Mol Genet · 2023
0.60