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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HCN3
hyperpolarization activated cyclic nucleotide gated potassium channel 3
Chromosome 1 · 1q22
NCBI Gene: 57657Ensembl: ENSG00000143630.11HGNC: HGNC:19183UniProt: Q9P1Z3
24PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Ion ChannelTransporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cellular response to cAMPsodium ion transmembrane transportregulation of membrane potentialpotassium ion transmembrane transport
✦AI Summary

HCN3 is a hyperpolarization-activated cation channel that conducts sodium and potassium ions with approximately 3:1 potassium preference 1. It contributes to pacemaker currents in cardiac and neuronal tissues, playing a pivotal role in maintaining excitability and rhythmic burst firing in hypothalamic nuclei [UniProt annotation supported by 22]. HCN3 exhibits distinctive biophysical properties compared to other HCN isoforms: slow activation kinetics and unique cyclic nucleotide sensitivity, with cAMP/cGMP inducing unprecedented negative shifts in activation voltage rather than typical positive shifts 3. Notably, human HCN3 is not modulated by intracellular cAMP, distinguishing it from HCN2 and HCN4 1. Clinically, HCN3 dysfunction associates with multiple disorders. Rare variants (R457H, R661Q) significantly reduce current density and have been identified in epilepsy patients, establishing HCN3 as a novel epilepsy candidate gene 4. HCN3 overexpression promotes hepatocellular carcinoma development in a female-biased manner, correlating with poorer patient prognosis 5. HCN3-deficient mice display impaired contextual information processing with attenuated fear extinction 6. The cryo-EM structure reveals cAMP and lipid binding mechanisms 7, providing molecular foundations for developing therapeutic compounds targeting HCN3 for depression, arrhythmia, and epilepsy.

Sources cited
1
HCN3 conducts Na+ and K+ with 3:1 K+ preference; human HCN3 lacks cAMP modulation unlike other HCN subtypes
PMID: 16043489
2
Cryo-EM structure of human HCN3 reveals cAMP and lipid binding sites and conformational changes; HCN channels studied as drug targets for depression, arrhythmia, and epilepsy
PMID: 38636662
3
HCN3 has slow activation kinetics; cAMP/cGMP cause unprecedented negative V0.5 shift; high expression in olfactory bulb and hypothalamus
PMID: 15923185
4
HCN3 variants (R457H, R661Q) identified in epilepsy patients; two variants reduce current density, establishing HCN3 as epilepsy candidate gene
PMID: 39361439
5
HCN3 overexpression promotes female-biased HCC development; HCN3 amplification correlates with poorer prognosis in female patients
PMID: 37733590
6
HCN3-deficient mice show impaired contextual information processing and attenuated fear extinction
PMID: 29375299
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PEX5LProtein interaction88%HCN1Protein interaction84%HCN2Protein interaction76%HCN4Protein interaction76%KCTD3Protein interaction71%KCNH8Shared pathway36%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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HCN3PEX5LHCN1HCN2HCN4KCTD3KCNH8
PROTEIN STRUCTURE
Preparing viewer…
PDB8INZ · 2.72 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.82LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.62 [0.47–0.82]
RankingsWhere HCN3 stands among ~20K protein-coding genes
  • #13,201of 20,598
    Most Researched24
  • #6,896of 17,882
    Most Constrained (LOEUF)0.82
Genes detectedHCN3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Cryo-EM structure of human HCN3 channel and its regulation by cAMP.
PMID: 38636662
J Biol Chem · 2024
1.00
2
The murine HCN3 gene encodes a hyperpolarization-activated cation channel with slow kinetics and unique response to cyclic nucleotides.
PMID: 15923185
J Biol Chem · 2005
0.90
3
MEG3, HCN3 and linc01105 influence the proliferation and apoptosis of neuroblastoma cells via the HIF-1α and p53 pathways.
PMID: 27824082
Sci Rep · 2016
0.80
4
Analysis of epilepsy-associated variants in HCN3 - Functional implications and clinical observations.
PMID: 39361439
Epilepsia Open · 2024
0.70
5
Hyperpolarization-activated cyclic nucleotide-gated cation channel 3 promotes HCC development in a female-biased manner.
PMID: 37733590
Cell Rep · 2023
0.60