HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
HFM1
helicase for meiosis 1
Chromosome 1 Β· 1p22.2
NCBI Gene: 164045Ensembl: ENSG00000162669.16HGNC: HGNC:20193UniProt: A2PYH4
22PubMed Papers
21Diseases
0Drugs
16Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
Golgi apparatusresolution of meiotic recombination intermediatesDNA helicase activitynucleusprimary ovarian insufficiencyhabitual abortiongenetic non-acquired premature ovarian failureneurodegenerative disease
✦AI Summary

HFM1 (helicase for meiosis 1) is a germ cell-specific DNA helicase essential for meiotic recombination and crossover formation 1. The protein localizes to the nucleus where it facilitates resolution of meiotic recombination intermediates and ensures proper synapsis of homologous chr1 during meiosis 2. Beyond meiosis, HFM1 plays unexpected roles in early embryogenesisβ€”nuclear localization of HFM1 is critical for zygotic genome activation, the developmental process initiating transcription in preimplantation embryos 3. HFM1 mutations cause diverse reproductive pathologies. Biallelic mutations are linked to premature ovarian failure (POI-9), with affected individuals experiencing oocyte depletion before puberty 4. In males, HFM1 defects cause non-obstructive azoospermia and severe oligozoospermia due to meiotic arrest 5. Notably, HFM1 mutations also contribute to androgenetic hydatidiform moles through defective female meiosis I 4. Functionally, HFM1 appears to regulate transcription of key meiotic genes including MSH5, MLH3, and SYCP genes 6. Clinically, whole-exome sequencing identifies HFM1 mutations in approximately 23% of genetically explained non-obstructive azoospermia cases 5. Importantly, while HFM1-deficient males produce few functional sperm, intracytoplasmic sperm injection (ICSI) can achieve favorable fertility outcomes 1, offering reproductive options despite severe meiotic defects.

Sources cited
1
HFM1 associated with nonsyndromic POI and implicated in meiosis/DNA repair pathways
PMID: 34794894
2
HFM1 mutations identified via whole-exome sequencing in POI kindreds
PMID: 26243799
3
HFM1 defects identified in 23% of genetically explained NOA cases; all individuals with meiotic gene defects had unsuccessful sperm retrieval
PMID: 35172124
4
HSF5 regulates HFM1 transcription; HFM1 essential for crossover formation and synapsis
PMID: 38958533
5
HFM1 mutations cause androgenetic hydatidiform moles; Hfm1-/- mice lose oocytes with meiotic spindle positioning defects
PMID: 39545410
6
HFM1 nuclear localization essential for zygotic genome activation; mutations cause preimplantation embryonic arrest
PMID: 41423819
7
HFM1 ensures crossover formation and synapsis; biallelic variants cause severe oligozoospermia; ICSI achieves favorable outcomes
PMID: 40320820
Disease Associationsβ“˜21
primary ovarian insufficiencyOpen Targets
0.67Moderate
habitual abortionOpen Targets
0.43Moderate
genetic non-acquired premature ovarian failureOpen Targets
0.40Weak
neurodegenerative diseaseOpen Targets
0.40Weak
azoospermiaOpen Targets
0.36Weak
limb injuryOpen Targets
0.29Weak
diabetes mellitusOpen Targets
0.28Weak
liver diseaseOpen Targets
0.26Weak
obesityOpen Targets
0.25Weak
osteitis deformansOpen Targets
0.25Weak
stomach diseaseOpen Targets
0.24Weak
Menstrual disorderOpen Targets
0.17Weak
brain aneurysmOpen Targets
0.14Weak
cystOpen Targets
0.08Suggestive
partial chromosome Y deletionOpen Targets
0.06Suggestive
46,XX testicular disorder of sex developmentOpen Targets
0.06Suggestive
Testicular regression syndromeOpen Targets
0.06Suggestive
46,XY complete gonadal dysgenesisOpen Targets
0.06Suggestive
46,XX gonadal dysgenesisOpen Targets
0.06Suggestive
46,XX ovotesticular disorder of sex developmentOpen Targets
0.05Suggestive
Premature ovarian failure 9UniProt
Pathogenic Variants16
NM_001017975.6(HFM1):c.2562_2563del (p.Glu856fs)Likely pathogenic
Premature ovarian failure 9
β˜…β˜†β˜†β˜†2022β†’ Residue 856
NM_001017975.6(HFM1):c.873+2T>CLikely pathogenic
Premature ovarian failure 9
β˜…β˜†β˜†β˜†2022
NM_001017975.6(HFM1):c.3057_3058del (p.Arg1021fs)Likely pathogenic
Premature ovarian failure 9
β˜…β˜†β˜†β˜†2022β†’ Residue 1021
NM_001017975.6(HFM1):c.1159-3_1159-2delLikely pathogenic
Premature ovarian failure 9
β˜…β˜†β˜†β˜†2021
NM_001017975.6(HFM1):c.2T>C (p.Met1Thr)Likely pathogenic
Premature ovarian failure 9
β˜…β˜†β˜†β˜†β†’ Residue 1
NM_001017975.6(HFM1):c.3588+1G>APathogenic
Azoospermia
β˜†β˜†β˜†β˜†2021
NM_001017975.6(HFM1):c.1905T>A (p.Tyr635Ter)Pathogenic
Premature ovarian failure 9
β˜†β˜†β˜†β˜†2021β†’ Residue 635
NM_001017975.6(HFM1):c.2410G>T (p.Glu804Ter)Likely pathogenic
Premature ovarian failure 9
β˜†β˜†β˜†β˜†2021β†’ Residue 804
NM_001017975.6(HFM1):c.1978-2A>CPathogenic
Genetic non-acquired premature ovarian failure
β˜†β˜†β˜†β˜†2019
NM_001017975.6(HFM1):c.1880T>C (p.Val627Ala)Likely pathogenic
Genetic non-acquired premature ovarian failure
β˜†β˜†β˜†β˜†2019β†’ Residue 627
NM_001017975.6(HFM1):c.2651T>G (p.Ile884Ser)Pathogenic
Premature ovarian failure 9
β˜†β˜†β˜†β˜†2014β†’ Residue 884
NM_001017975.6(HFM1):c.1686G>C (p.Arg562Ser)Pathogenic
Premature ovarian failure 9
β˜†β˜†β˜†β˜†2014β†’ Residue 562
NM_001017975.6(HFM1):c.2206G>A (p.Gly736Ser)Pathogenic
Premature ovarian failure 9
β˜†β˜†β˜†β˜†2014β†’ Residue 736
NM_001017975.6(HFM1):c.3929_3930delinsG (p.Pro1310fs)Pathogenic
Premature ovarian failure 9
β˜†β˜†β˜†β˜†2014β†’ Residue 1310
NM_001017975.6(HFM1):c.1355G>A (p.Arg452Gln)Pathogenic
Spermatogenic failure 4
β˜†β˜†β˜†β˜†β†’ Residue 452
NM_001017975.6(HFM1):c.1472T>C (p.Leu491Pro)Pathogenic
Spermatogenic failure 4
β˜†β˜†β˜†β˜†β†’ Residue 491
View on ClinVar β†—
Related Genes
CDC5LProtein interaction100%XAB2Protein interaction100%BUD31Protein interaction100%SNW1Protein interaction100%PLRG1Protein interaction100%CRNKL1Protein interaction100%
Tissue Expression6 tissues
Ovary
100%
Heart
22%
Bone Marrow
20%
Brain
6%
Lung
4%
Liver
2%
Gene Interaction Network
Click a node to explore
HFM1CDC5LXAB2BUD31SNW1PLRG1CRNKL1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt A2PYH4
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.06LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.76 [0.55–1.06]
RankingsWhere HFM1 stands among ~20K protein-coding genes
  • #13,674of 20,598
    Most Researched22
  • #2,425of 5,498
    Most Pathogenic Variants16
  • #10,675of 17,882
    Most Constrained (LOEUF)1.06
Genes detectedHFM1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetics of ovarian insufficiency and defects of folliculogenesis.
PMID: 34794894
Best Pract Res Clin Endocrinol Metab Β· 2022
1.00
2
Genetics of primary ovarian insufficiency: new developments and opportunities.
PMID: 26243799
Hum Reprod Update Β· 2015
0.90
3
Whole-exome sequencing improves the diagnosis and care of men with non-obstructive azoospermia.
PMID: 35172124
Am J Hum Genet Β· 2022
0.80
4
HSF5 Deficiency Causes Male Infertility Involving Spermatogenic Arrest at Meiotic Prophase I in Humans and Mice.
PMID: 38958533
Adv Sci (Weinh) Β· 2024
0.70
5
Defects in meiosis I contribute to the genesis of androgenetic hydatidiform moles.
PMID: 39545410
J Clin Invest Β· 2024
0.60