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GeneE
27 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HLA-DRA
major histocompatibility complex, class II, DR alpha
Chromosome 6 · 6p21.32
NCBI Gene: 3122Ensembl: ENSG00000204287.15HGNC: HGNC:4947UniProt: A0A0G2JMH6
305PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Trending
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingMHC class II protein complex bindingpolysaccharide bindingpeptide antigen binding
✦AI Summary

HLA-DRA encodes the alpha chain of the MHC class II DR molecule, which partners with HLA-DRB to present antigenic peptides to CD4+ T cells for immune recognition 1. The protein functions as a critical component in antigen presentation, displaying peptides of 10-30 amino acids derived from endocytosed antigens processed in lysosomes. In disease contexts, HLA-DRA expression serves as an activation marker on T cells, with nearly one-third of coronary plaque T cells expressing HLA-DRA, indicating TCR-mediated activation 1. These activated T cells show clonal expansion and cross-reactivity to viral and self-antigens, potentially contributing to autoimmune processes in atherosclerosis 1. HLA-DRA expression is prognostically significant across multiple conditions: reduced expression in peripheral blood CD14+ cells predicts severe COVID-19 outcomes as early as four days before respiratory decline 2, while elevated expression occurs in osteoarthritis and unstable atherosclerotic plaques, correlating with inflammatory immune infiltration 34. Genetic variants in HLA-DRA show association with alcohol dependence in Caucasian populations 5. The gene's transcription is tightly regulated through tissue-specific and cytokine-inducible mechanisms involving multiple transcription factor families 6. Therapeutically, HLA-DRA represents a potential drug target, with Mendelian randomization suggesting its downregulation may reduce sarcopenia risk 7.

Sources cited
1
HLA-DRA serves as T cell activation marker and is involved in antigen presentation in coronary plaques
PMID: 35430876
2
Reduced HLA-DRA expression in CD14+ cells predicts severe COVID-19 outcomes
PMID: 36801619
3
HLA-DRA expression is elevated in osteoarthritis with immune infiltration
PMID: 35734177
4
HLA-DRA is elevated in unstable atherosclerotic plaques
PMID: 36211422
5
HLA-DRA genetic variants are associated with alcohol dependence
PMID: 22890421
6
HLA-DRA transcription is regulated by tissue-specific and cytokine-inducible mechanisms
PMID: 1754710
7
HLA-DRA downregulation may reduce sarcopenia risk based on Mendelian randomization
PMID: 38644354
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ACANProtein interaction100%CD74Protein interaction100%COL2A1Protein interaction100%CTSSProtein interaction100%MLANAProtein interaction100%HLA-BProtein interaction100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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HLA-DRAACANCD74COL2A1CTSSMLANAHLA-B
PROTEIN STRUCTURE
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PDB5NI9 · 1.33 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.63LoF Tolerant
pLIⓘ
0.71Intermediate
Observed/Expected LoF0.35 [0.20–0.63]
RankingsWhere HLA-DRA stands among ~20K protein-coding genes
  • #1,134of 20,598
    Most Researched305 · top 10%
  • #4,459of 17,882
    Most Constrained (LOEUF)0.63 · top quartile
Genes detectedHLA-DRA
Sources retrieved27 papers
Response time—
📄 Sources
27▼
1
Bioinformatics-Led Discovery of Osteoarthritis Biomarkers and Inflammatory Infiltrates.
PMID: 35734177
Front Immunol · 2022
1.00
2
A spatially resolved transcriptome landscape during thyroid cancer progression.
PMID: 40157360
Cell Rep Med · 2025
0.90
3
CD74 and HLA-DRA in Cervical Carcinogenesis: Potential Targets for Antitumour Therapy.
PMID: 35208514
Medicina (Kaunas) · 2022
0.84
4
Systematic druggable genome-wide Mendelian randomization identifies therapeutic targets for sarcopenia.
PMID: 38644354
J Cachexia Sarcopenia Muscle · 2024
0.80
5
Genetic polymorphism of HLA-DRA and alcohol consumption affect hepatitis development in the Korean population.
PMID: 35895219
Genes Genomics · 2022
0.76