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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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HLA-F
major histocompatibility complex, class I, F
Chromosome 6 · 6p22.1
NCBI Gene: 3134Ensembl: ENSG00000137403.19HGNC: HGNC:4963UniProt: A0A0G2JH66
145PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
endoplasmic reticulumplasma membranecell surfaceearly endosome membrane
✦AI Summary

HLA-F is a non-classical MHC class I molecule functioning in two distinct forms: a peptide-bound heterotrimeric complex with β2-microglobulin that presents post-translationally modified self-peptides [UniProt], and a peptide-free open conformer (OC) lacking peptide and β2-microglobulin [UniProt]. The peptide-bound form acts as a ligand for the inhibitory receptor LILRB1, contributing to maternal-fetal immune tolerance [UniProt]. The peptide-free OC engages activating KIR3DS1 receptors on NK cells, triggering degranulation and anti-viral cytokine production [UniProt], while simultaneously interacting with inhibitory KIR3DL2 receptors to suppress NK and T cell effector functions [UniProt]. HLA-F may cross-present exogenous antigens to CD8+ T cells and protect motor neurons through KIR3DL2 interactions [UniProt]. Clinically, reduced HLA-F expression at the maternal-fetal interface is associated with preeclampsia pathogenesis 1, while HLA-F overexpression in trophoblasts promotes cell proliferation and invasion, and increases immunoregulatory cytokine secretion in NK cells 1. In cancer, HLA-F expression correlates with poor prognosis in gastric cancer, independently affecting postoperative outcomes 2. HLA-F polymorphisms show associations with HBV infection outcome 3, malaria susceptibility 4, and coronary artery disease risk 5, suggesting broader roles in infectious disease and inflammatory pathologies.

Sources cited
1
HLA-F is reduced in preeclampsia at the maternal-fetal interface; overexpression promotes trophoblast proliferation/invasion and increases NK cell immunoregulatory cytokine secretion
PMID: 37854606
2
HLA-F expression in gastric cancer correlates with poor five-year survival and clinical progression factors
PMID: 25862890
3
HLA-F polymorphisms associate with spontaneous HBV clearance outcomes
PMID: 40184242
4
HLA-F genetic variants associate with malaria susceptibility in exposed children
PMID: 33781967
5
HLA-F polymorphisms show associations with coronary artery disease risk
PMID: 26780503
6
HLA-F functions as both open conformers binding KIRs and peptide-bound forms, with roles in reproduction and pregnancy
PMID: 31558330
7
HLA-F is expressed on extravillous trophoblast and contributes to pregnancy immunology
PMID: 16487601
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes

No related genes found for this gene.

Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network

No interaction data available for this gene.

PROTEIN STRUCTURE
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PDB5IUE · 2.62 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.21LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.95 [0.75–1.21]
RankingsWhere HLA-F stands among ~20K protein-coding genes
  • #3,137of 20,598
    Most Researched145 · top quartile
  • #12,719of 17,882
    Most Constrained (LOEUF)1.21
Genes detectedHLA-F
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Single-cell profiling reveals immune disturbances landscape and HLA-F-mediated immune tolerance at the maternal-fetal interface in preeclampsia.
PMID: 37854606
Front Immunol · 2023
1.00
2
A role for both HLA-F and HLA-G in reproduction and during pregnancy?
PMID: 31558330
Hum Immunol · 2020
0.90
3
Targeting of Non-Classical Human Leukocyte Antigens as Novel Therapeutic Strategies in Cancer.
PMID: 39766165
Cancers (Basel) · 2024
0.80
4
Human leukocyte antigen (HLA)-E and HLA-F expression in gastric cancer.
PMID: 25862890
Anticancer Res · 2015
0.70
5
Association of HLA-Ib (HLA-G, HLA-E and HLA-F) with spontaneous HBV clearance.
PMID: 40184242
Infect Dis (Lond) · 2025
0.60