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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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HPSE2
heparanase 2 (inactive)
Chromosome 10 Β· 10q24.2
NCBI Gene: 60495Ensembl: ENSG00000172987.14HGNC: HGNC:18374UniProt: Q2M1H9
60PubMed Papers
21Diseases
0Drugs
21Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
heparanase activityheparan sulfate proteoglycan bindingextracellular matrixGO:0005615Ochoa syndromeAbnormality of the skeletal systemmigraine disordercongenital anomaly of kidney and urinary tract
✦AI Summary

HPSE2 (heparanase-2) is a structurally related but catalytically inactive pseudoenzyme that functions as an endogenous inhibitor of heparanase-1 (HPSE1). Although HPSE2 binds heparin and heparan sulfate (HS) with higher affinity than HPSE1, it lacks heparanase enzymatic activity and instead competes with HPSE1 for substrate binding, effectively suppressing HS degradation 1. HPSE2 is primarily expressed in smooth muscle-containing tissues, particularly the bladder and brain 1. The protein localizes to pelvic gangliaβ€”autonomic relay stations controlling bladder voidingβ€”where it plays a critical role in neurogenic bladder function 2. Clinically, HPSE2 mutations cause urofacial (Ochoa) syndrome, an autosomal recessive disorder characterized by abnormal facial grimacing and severe lower urinary tract dysfunction including incomplete bladder emptying and hydronephrosis 34. Mouse models reveal that Hpse2 mutations result in impaired neurogenic relaxation of bladder outflow tracts, suggesting the disease originates from peripheral autonomic neuropathy 5. Gene therapy using AAV9/HPSE2 successfully restored bladder function in mutant mice, demonstrating therapeutic potential 2. Beyond urofacial syndrome, HPSE2 exhibits protective functions in endothelial cells, where it prevents HPSE1-mediated HS shedding and protects against LPS-induced inflammatory responses 6. Genetic variants in HPSE2 also show protective associations against multiple myeloma progression 7.

Sources cited
1
HPSE2 binds HS more strongly than HPSE1, lacks heparanase activity, acts as pseudoenzyme, expressed mainly in smooth muscle tissues
PMID: 32274738
2
HPSE2 mutations cause urofacial syndrome with bladder voiding defects; HPSE2 localizes to pelvic ganglia controlling bladder function; AAV9/HPSE2 gene therapy ameliorates neurogenic relaxation defects
PMID: 38990208
3
Urofacial syndrome associated with autosomal recessive HPSE2 mutations on chromosome 10q23-q24; characterized by inverted facial expression and lower urinary tract dysfunction due to peripheral neuropathy
PMID: 33558177
4
HPSE2 mutations cause urofacial syndrome with abnormal facial grimacing and urinary tract dysfunction
PMID: 24966895
5
HPSE2 detected in bladder nerves; Hpse2 mutant mice have voiding defects and abnormal bladder nerve patterns
PMID: 32274739
6
HPSE2 protects endothelial cells from LPS-mediated injury by inhibiting TLR4 signaling and preventing HPSE1-mediated heparan sulfate shedding
PMID: 31537875
7
HPSE2 SNPs show protective association against multiple myeloma paraskeletal disease and lytic bone lesions
PMID: 36980254
Disease Associationsβ“˜21
Ochoa syndromeOpen Targets
0.76Strong
Abnormality of the skeletal systemOpen Targets
0.44Moderate
migraine disorderOpen Targets
0.43Moderate
congenital anomaly of kidney and urinary tractOpen Targets
0.42Moderate
congenital hydronephrosisOpen Targets
0.42Moderate
HeadacheOpen Targets
0.41Moderate
ureterolithiasisOpen Targets
0.31Weak
headache disorderOpen Targets
0.30Weak
Chronic Obstructive AsthmaOpen Targets
0.29Weak
PainOpen Targets
0.29Weak
multinodular goiterOpen Targets
0.27Weak
ovarian dysfunctionOpen Targets
0.26Weak
eye injuryOpen Targets
0.25Weak
cervical carcinomaOpen Targets
0.25Weak
Abnormality of the gastrointestinal tractOpen Targets
0.25Weak
facial morphologyOpen Targets
0.24Weak
type 2 diabetes mellitusOpen Targets
0.24Weak
joint diseaseOpen Targets
0.23Weak
genetic disorderOpen Targets
0.19Weak
neoplasmOpen Targets
0.11Weak
Urofacial syndrome 1UniProt
Pathogenic Variants21
NM_021828.5(HPSE2):c.1465_1466del (p.Asn489fs)Pathogenic
Urofacial syndrome type 1|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 489
NM_021828.5(HPSE2):c.291-1G>TLikely pathogenic
Urofacial syndrome type 1|not provided
β˜…β˜…β˜†β˜†2024
NM_021828.5(HPSE2):c.1099-1G>APathogenic
Ochoa syndrome|Urofacial syndrome type 1|not provided
β˜…β˜…β˜†β˜†2024
NM_021828.5(HPSE2):c.57dup (p.Ala20fs)Pathogenic
Urofacial syndrome type 1|HPSE2-related disorder
β˜…β˜…β˜†β˜†2024β†’ Residue 20
NM_021828.5(HPSE2):c.457C>T (p.Arg153Ter)Pathogenic
Urofacial syndrome type 1|not provided|Congenital anomaly of kidney and urinary tract
β˜…β˜…β˜†β˜†2024β†’ Residue 153
NM_021828.5(HPSE2):c.1516C>T (p.Arg506Ter)Pathogenic
Urofacial syndrome type 1|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 506
NM_021828.5(HPSE2):c.448+1G>CLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_021828.5(HPSE2):c.151dup (p.Arg51fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 51
NM_021828.5(HPSE2):c.1407del (p.Pro470fs)Likely pathogenic
Urofacial syndrome type 1
β˜…β˜†β˜†β˜†2024β†’ Residue 470
NM_021828.5(HPSE2):c.1113del (p.Thr370_Tyr371insTer)Likely pathogenic
Urofacial syndrome type 1
β˜…β˜†β˜†β˜†2024β†’ Residue 370
NM_021828.5(HPSE2):c.250del (p.Asp84fs)Likely pathogenic
Urofacial syndrome type 1
β˜…β˜†β˜†β˜†2024β†’ Residue 84
NM_021828.5(HPSE2):c.1308del (p.Phe436fs)Likely pathogenic
Urofacial syndrome type 1
β˜…β˜†β˜†β˜†2024β†’ Residue 436
NM_021828.5(HPSE2):c.1145_1149del (p.Val382fs)Likely pathogenic
Urofacial syndrome type 1
β˜…β˜†β˜†β˜†2024β†’ Residue 382
NM_021828.5(HPSE2):c.1414C>T (p.Arg472Ter)Pathogenic
Urofacial syndrome type 1|not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 472
NM_021828.5(HPSE2):c.1004+1G>ALikely pathogenic
not provided
β˜…β˜†β˜†β˜†2022
NM_021828.5(HPSE2):c.429T>A (p.Tyr143Ter)Pathogenic
Ochoa syndrome|Urofacial syndrome type 1
β˜…β˜†β˜†β˜†2021β†’ Residue 143
NM_021828.5(HPSE2):c.785-2A>GLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2021
NM_021828.5(HPSE2):c.902T>A (p.Leu301Ter)Pathogenic
Urofacial syndrome type 1
β˜…β˜†β˜†β˜†2019β†’ Residue 301
NM_021828.5(HPSE2):c.1099-2A>GPathogenic
Congenital anomaly of kidney and urinary tract
β˜†β˜†β˜†β˜†2018
NM_021828.5(HPSE2):c.1628A>T (p.Asn543Ile)Pathogenic
Urofacial syndrome type 1
β˜†β˜†β˜†β˜†2012β†’ Residue 543
View on ClinVar β†—
Related Genes
SDC1Protein interaction94%HPSEProtein interaction90%LRIG2Protein interaction72%IDSProtein interaction69%ADAMTSL5Shared pathway50%COL6A5Shared pathway50%
Tissue Expression6 tissues
Brain
100%
Lung
20%
Ovary
4%
Heart
2%
Bone Marrow
1%
Liver
1%
Gene Interaction Network
Click a node to explore
HPSE2SDC1HPSELRIG2IDSADAMTSL5COL6A5
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q2M1H9
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.84LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.62 [0.47–0.84]
RankingsWhere HPSE2 stands among ~20K protein-coding genes
  • #7,669of 20,598
    Most Researched60
  • #2,151of 5,498
    Most Pathogenic Variants21
  • #7,187of 17,882
    Most Constrained (LOEUF)0.84
Genes detectedHPSE2
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Hpa2 Gene Cloning.
PMID: 32274738
Adv Exp Med Biol Β· 2020
1.00
2
Human
PMID: 38990208
Elife Β· 2024
0.90
3
Effect of HPSE and HPSE2 SNPs on the Risk of Developing Primary Paraskeletal Multiple Myeloma.
PMID: 36980254
Cells Β· 2023
0.80
4
Urofacial (ochoa) syndrome: A literature review.
PMID: 33558177
J Pediatr Urol Β· 2021
0.70
5
Urofacial (Ochoa) syndrome with a founder pathogenic variant in the HPSE2 gene: a case report and mutation origin.
PMID: 39150614
J Appl Genet Β· 2025
0.60