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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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HS3ST1
heparan sulfate-glucosamine 3-sulfotransferase 1
Chromosome 4 · 4p15.33
NCBI Gene: 9957Ensembl: ENSG00000002587.11HGNC: HGNC:5194UniProt: O14792
21PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
glycosaminoglycan biosynthetic process[heparan sulfate]-glucosamine 3-sulfotransferase activityheparan sulfate proteoglycan biosynthetic processsulfotransferase activitybrain aneurysmcardiovascular diseasebipolar disorderrestless legs syndrome
✦AI Summary

HS3ST1 encodes heparan sulfate-glucosamine 3-sulfotransferase 1, which catalyzes the rate-limiting step in biosynthesis of anticoagulant heparan sulfate by transferring sulfate groups to position 3 of glucosamine residues 12. This modification is crucial for creating the antithrombin pentasaccharide binding site, generating antithrombin-binding heparan sulfate (HSAT+) that mediates antithrombin's anti-inflammatory activities 34. HS3ST1 expression is ubiquitous in epithelial cell basement membranes and plays important roles in tumor biology 4. In colorectal cancer, HS3ST1 is highly expressed in late-stage tumor-infiltrating immune cells and promotes tumor growth 5. Conversely, in pancreatic cancer, HS3ST1 expression decreases during malignant progression, and its loss promotes inflammation, suppresses apoptosis, and increases metastasis 4. HS3ST1 also promotes non-small cell lung cancer progression through the SPOP/FADD/NF-κB pathway 6. Genetic variants in HS3ST1 associate with coronary artery disease severity, with reduced expression correlating with increased atherosclerotic events 3. These findings establish HS3ST1 as a critical regulator of inflammation and vascular homeostasis with complex, tissue-specific roles in cancer progression.

Sources cited
1
HS3ST1 catalyzes the rate-limiting step in anticoagulant heparan sulfate biosynthesis
PMID: 8900198
2
HS3ST1 creates antithrombin pentasaccharide binding site through 3-O-sulfation
PMID: 9988768
3
HS3ST1-produced HSAT+ mediates antithrombin's anti-inflammatory activity and associates with coronary artery disease
PMID: 28126521
4
HS3ST1 is ubiquitously expressed in epithelial basement membranes and suppresses pancreatic tumor progression
PMID: 40924474
5
HS3ST1 is highly expressed in late-stage colorectal cancer immune cells and promotes tumor growth
PMID: 32367039
6
HS3ST1 promotes non-small cell lung cancer through SPOP/FADD/NF-κB pathway
PMID: 35909476
Disease Associationsⓘ20
brain aneurysmOpen Targets
0.31Weak
cardiovascular diseaseOpen Targets
0.30Weak
bipolar disorderOpen Targets
0.30Weak
restless legs syndromeOpen Targets
0.28Weak
ovarian neoplasmOpen Targets
0.25Weak
placenta praeviaOpen Targets
0.24Weak
alcohol drinkingOpen Targets
0.24Weak
cervical carcinomaOpen Targets
0.23Weak
neurodegenerative diseaseOpen Targets
0.22Weak
eye injuryOpen Targets
0.21Weak
diaphragmatic herniaOpen Targets
0.20Weak
vascular diseaseOpen Targets
0.20Weak
arteriosclerosisOpen Targets
0.19Weak
arteriosclerosis disorderOpen Targets
0.19Weak
coronary artery diseaseOpen Targets
0.19Weak
Liver abscessOpen Targets
0.19Weak
thyroid cancerOpen Targets
0.19Weak
generalized anxiety disorderOpen Targets
0.19Weak
pericarditisOpen Targets
0.18Weak
goutOpen Targets
0.18Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
HS3ST2Shared pathway100%SULT1C3Protein interaction85%SULT1B1Protein interaction85%SULT1C4Protein interaction85%USTProtein interaction79%HS6ST1Protein interaction75%
Tissue Expression6 tissues
Ovary
100%
Bone Marrow
15%
Brain
6%
Heart
4%
Lung
4%
Liver
1%
Gene Interaction Network
Click a node to explore
HS3ST1HS3ST2SULT1C3SULT1B1SULT1C4USTHS6ST1
PROTEIN STRUCTURE
Preparing viewer…
PDB1ZRH · 2.10 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.71LoF Tolerant
pLIⓘ
0.41Tolerant
Observed/Expected LoF0.39 [0.23–0.71]
RankingsWhere HS3ST1 stands among ~20K protein-coding genes
  • #13,924of 20,598
    Most Researched21
  • #5,440of 17,882
    Most Constrained (LOEUF)0.71
Genes detectedHS3ST1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Transdifferentiation of tumor infiltrating innate lymphoid cells during progression of colorectal cancer.
PMID: 32367039
Cell Res · 2020
1.00
2
Genetic variability in proteoglycan biosynthetic genes reveals new facets of heparan sulfate diversity.
PMID: 39630030
Essays Biochem · 2024
0.90
3
HS3ST1 genotype regulates antithrombin's inflammomodulatory tone and associates with atherosclerosis.
PMID: 28126521
Matrix Biol · 2017
0.80
4
HS3ST1 Promotes Non-Small-Cell Lung Cancer Progression by Targeting the SPOP/FADD/NF-
PMID: 35909476
Biomed Res Int · 2022
0.70
5
Genetic Markers of Postmortem Brain Iron.
PMID: 39918201
J Neurochem · 2025
0.60