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GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
HSPG2
heparan sulfate proteoglycan 2
Chromosome 1 Β· 1p36.12
NCBI Gene: 3339Ensembl: ENSG00000142798.20HGNC: HGNC:5273UniProt: P98160
216PubMed Papers
22Diseases
0Drugs
116Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
extracellular exosomeextracellular matrixGO:0005615focal adhesionSchwartz-Jampel syndromeDyssegmental dysplasia, Silverman-Handmaker typeSilverman-Handmaker type dyssegmental dysplasiaCOVID-19
✦AI Summary

HSPG2 (heparan sulfate proteoglycan 2), also known as perlecan, is a large modular extracellular matrix proteoglycan that plays critical roles in tissue structure and development. The protein functions as a basement membrane component with anti-angiogenic properties requiring calcium ion binding for full activity [UniProt]. HSPG2 promotes structural and functional maturation of cardiomyocytes by regulating extracellular matrix organization and metabolic processes, likely through binding to the dystroglycan complex 1. During wound healing and tissue regeneration, HSPG2 expression is activated to reestablish tissue boundaries and basement membranes 2. HSPG2 also participates in fibrosis regulation through the TNFSF13/HSPG2 signaling pathway, which activates NF-ΞΊB signaling and controls fibroblast proliferation and migration 34. The gene is highly conserved evolutionarily, present in placozoans, cnidarians, and bilaterians, reflecting its ancient role in differentiating cell types separated by acellular matrices 2. HSPG2 mutations and haploinsufficiency are associated with multiple clinical conditions including Schwartz-Jampel syndrome, dyssegmental dysplasia Silverman-Handmaker type, 1p36 deletion syndrome, Balkan endemic nephropathy, and diabetic nephropathy 5678. These associations highlight HSPG2's importance in basement membrane integrity, tissue organization, and pathological processes involving fibrosis and metabolic dysfunction.

Sources cited
1
Perlecan promotes structural, contractile, and metabolic maturation of cardiomyocytes through dystroglycan complex binding and ECM regulation
PMID: 38198277
2
HSPG2 mediates TNFSF13 signaling pathway that regulates fibroblast proliferation, migration, fibrosis, and inflammation via NF-ΞΊB activation
PMID: 38046235
3
HSPG2 promotes interactions between fibroblasts and keratinocytes through ligand-receptor pairing with DAG1 in hypertrophic scar remodeling
PMID: 38448448
4
HSPG2 gene is conserved in placozoans, cnidarians, and bilaterians and is activated during tissue regeneration to reestablish basement membranes
PMID: 25876075
5
HSPG2 mutations cause Schwartz-Jampel syndrome, an autosomal recessive disorder with myotonic and bone/cartilage abnormalities
PMID: 37975769
6
HSPG2 haploinsufficiency contributes to phenotypes in 1p36 deletion syndrome
PMID: 26345236
7
HSPG2 mutations in Balkan endemic nephropathy patients encode proteins involved in basement membrane/extracellular matrix and angiogenesis
PMID: 25725245
8
HSPG2 identified as hub gene with diagnostic value in diabetic nephropathy pathogenesis related to metabolic reprogramming
PMID: 39609849
Disease Associationsβ“˜22
Schwartz-Jampel syndromeOpen Targets
0.81Strong
Dyssegmental dysplasia, Silverman-Handmaker typeOpen Targets
0.78Strong
Silverman-Handmaker type dyssegmental dysplasiaOpen Targets
0.77Strong
COVID-19Open Targets
0.54Moderate
atrial fibrillationOpen Targets
0.48Moderate
dengue diseaseOpen Targets
0.46Moderate
AL amyloidosisOpen Targets
0.37Weak
aortic stenosisOpen Targets
0.37Weak
cataractOpen Targets
0.33Weak
chronic obstructive pulmonary diseaseOpen Targets
0.31Weak
cardiac arrhythmiaOpen Targets
0.30Weak
colorectal cancerOpen Targets
0.30Weak
Abnormal facial shapeOpen Targets
0.30Weak
ovarian dysfunctionOpen Targets
0.29Weak
Rare pervasive developmental disorderOpen Targets
0.27Weak
pernicious anemiaOpen Targets
0.26Weak
atrial flutterOpen Targets
0.21Weak
hypertensionOpen Targets
0.20Weak
genetic disorderOpen Targets
0.20Weak
connective tissue diseaseOpen Targets
0.19Weak
Dyssegmental dysplasia Silverman-Handmaker typeUniProt
Schwartz-Jampel syndromeUniProt
Pathogenic Variants116
NM_005529.7(HSPG2):c.5449C>T (p.Arg1817Ter)Pathogenic
not provided|Autosomal recessive HSPG2-related disorders
β˜…β˜…β˜†β˜†2026β†’ Residue 1817
NM_005529.7(HSPG2):c.8017C>T (p.Arg2673Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 2673
NM_005529.7(HSPG2):c.1219dup (p.Gln407fs)Pathogenic
not provided|Schwartz-Jampel syndrome type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 407
NM_005529.7(HSPG2):c.9958T>C (p.Cys3320Arg)Likely pathogenic
Schwartz-Jampel syndrome|Schwartz-Jampel syndrome type 1
β˜…β˜…β˜†β˜†2025β†’ Residue 3320
NM_005529.7(HSPG2):c.3119_3120dup (p.His1041fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1041
NM_005529.7(HSPG2):c.5015-1G>ALikely pathogenic
not provided|Lethal Kniest-like syndrome;Schwartz-Jampel syndrome type 1
β˜…β˜…β˜†β˜†2025
NM_005529.7(HSPG2):c.9033_9034del (p.Pro3011_Ser3012insTer)Pathogenic
not provided|HSPG2-related disorder|Schwartz-Jampel syndrome type 1;Lethal Kniest-like syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 3011
NM_005529.7(HSPG2):c.10894C>T (p.Arg3632Ter)Pathogenic
not provided|Lethal Kniest-like syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 3632
NM_005529.7(HSPG2):c.1120C>T (p.Arg374Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 374
NM_005529.7(HSPG2):c.9970G>A (p.Gly3324Arg)Likely pathogenic
Schwartz-Jampel syndrome|not provided|Lethal Kniest-like syndrome|Schwartz-Jampel syndrome type 1
β˜…β˜…β˜†β˜†2024β†’ Residue 3324
NM_005529.7(HSPG2):c.12922C>T (p.Gln4308Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 4308
NM_005529.7(HSPG2):c.7006+1G>APathogenic
not provided|Schwartz-Jampel syndrome type 1;Lethal Kniest-like syndrome|Malignant tumor of urinary bladder
β˜…β˜…β˜†β˜†2024
NM_005529.7(HSPG2):c.8316+1G>APathogenic
Schwartz-Jampel syndrome|not provided
β˜…β˜…β˜†β˜†2022
NM_005529.7(HSPG2):c.3892C>T (p.Gln1298Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2022β†’ Residue 1298
NM_005529.7(HSPG2):c.9109C>T (p.Gln3037Ter)Pathogenic
Abnormal facial shape|not provided
β˜…β˜…β˜†β˜†2022β†’ Residue 3037
NM_005529.7(HSPG2):c.5014+1G>ALikely pathogenic
not provided
β˜…β˜…β˜†β˜†2022
NM_005529.7(HSPG2):c.3268C>T (p.Arg1090Ter)Pathogenic
Lethal Kniest-like syndrome
β˜…β˜†β˜†β˜†2026β†’ Residue 1090
NM_005529.7(HSPG2):c.3656+1G>ALikely pathogenic
Lethal Kniest-like syndrome
β˜…β˜†β˜†β˜†2026
NM_005529.7(HSPG2):c.4765G>T (p.Glu1589Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2026β†’ Residue 1589
NM_005529.7(HSPG2):c.5679del (p.Thr1894fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 1894
View on ClinVar β†—
Related Genes
FBLN2Protein interaction100%APPProtein interaction100%LAMB1Protein interaction100%NID2Protein interaction100%ECM1Protein interaction100%COLQProtein interaction99%
Tissue Expression6 tissues
Heart
100%
Lung
74%
Ovary
36%
Liver
13%
Brain
12%
Bone Marrow
4%
Gene Interaction Network
Click a node to explore
HSPG2FBLN2APPLAMB1NID2ECM1COLQ
PROTEIN STRUCTURE
Preparing viewer…
PDB3SH4 Β· 1.50 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.60LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.55 [0.49–0.60]
RankingsWhere HSPG2 stands among ~20K protein-coding genes
  • #1,920of 20,598
    Most Researched216 Β· top 10%
  • #672of 5,498
    Most Pathogenic Variants116 Β· top quartile
  • #4,147of 17,882
    Most Constrained (LOEUF)0.60 Β· top quartile
Genes detectedHSPG2
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
1p36 deletion syndrome: an update.
PMID: 26345236
Appl Clin Genet Β· 2015
1.00
2
Perlecan (HSPG2) promotes structural, contractile, and metabolic development of human cardiomyocytes.
PMID: 38198277
Cell Rep Β· 2024
0.90
3
Exosome Derived from Mesenchymal Stem Cells Alleviates Hypertrophic Scar by Inhibiting the Fibroblasts via TNFSF-13/HSPG2 Signaling Pathway.
PMID: 38046235
Int J Nanomedicine Β· 2023
0.80
4
Whole-Exome Sequencing Among Chinese Patients With Hereditary Diffuse Gastric Cancer.
PMID: 36484990
JAMA Netw Open Β· 2022
0.72
5
Balkan nephropathy.
PMID: 25725245
Clin Nephrol Β· 2015
0.70