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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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ID3
inhibitor of DNA binding 3
Chromosome 1 · 1p36.12
NCBI Gene: 3399Ensembl: ENSG00000117318.10HGNC: HGNC:5362UniProt: Q02535
136PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingnegative regulation of DNA-templated transcriptionnucleoplasmneuron differentiationBurkitts lymphomalymphomanon-Hodgkins lymphomadiffuse large B-cell lymphoma
✦AI Summary

ID3 is a transcriptional regulator lacking a DNA-binding domain that functions primarily as a negative regulator of basic helix-loop-helix (bHLH) transcription factors through heterodimer formation. In myogenesis, ID3 inhibits muscle differentiation while promoting precursor cell proliferation 1. ID3 regulates immune responses by controlling macrophage activation; specifically, it shifts the macrophage inhibitory/activating receptor balance to promote anti-tumor activity by buffering transcription factor binding at the SIRPA locus 2. In T cell biology, ID3 identifies stem-like T cells and is essential for maintaining CD8 T cell responses during chr1 infection or cancer, enabling precursor exhausted T (Tpex) cell generation 3. As a p53 target gene, ID3 acts as a tumor suppressor in lung cancer by regulating E-cadherin expression and suppressing metastatic potential 4. In Burkitt lymphoma, ID3 mutations occur in approximately 70% of sporadic cases, fostering dependency on TCF3 signaling 5. Therapeutically, ID3 downmodulation enhances CAR T cell efficacy in solid tumors; ID3/SOX4 double-knockout CAR T cells demonstrate prolonged anti-tumor activity in pancreatic cancer 67. These findings establish ID3 as a multifunctional regulator with significant implications for cancer immunotherapy and lymphoma pathogenesis.

Sources cited
1
ID3 is a key regulator of CAR T cell exhaustion; genetic downmodulation of ID3 improves CAR T cell therapy efficacy in solid tumors
PMID: 34861191
2
ID3 marks a subpopulation of muscle satellite cells; context for ID3's role in myogenic cell differentiation
PMID: 38751367
3
ID3 controls macrophage activation and anti-tumor activity by buffering ELK1 and E2A binding at the SIRPA locus
PMID: 38326607
4
ID3 mutations define the IC-BL subgroup of Burkitt lymphoma and associate with distinct patient outcomes
PMID: 36201743
5
ID3 mutations in 70% of sporadic Burkitt lymphoma cases foster TCF3 dependency and pro-survival signaling
PMID: 22885699
6
ID3/SOX4 double-knockout CAR T cells exhibit prolonged relapse-free survival in pancreatic cancer models
PMID: 40829595
7
ID3 identifies stem-like T cells and is required for maintaining CD8 T cell responses in chronic infection and cancer
PMID: 39888981
8
ID3 is a direct p53 target gene that acts as a tumor suppressor in lung cancer by regulating E-cadherin and metastasis
PMID: 38513475
Disease Associationsⓘ20
Burkitts lymphomaOpen Targets
0.51Moderate
lymphomaOpen Targets
0.38Weak
non-Hodgkins lymphomaOpen Targets
0.37Weak
diffuse large B-cell lymphomaOpen Targets
0.24Weak
Abnormality of the skeletal systemOpen Targets
0.21Weak
chronic lymphocytic leukemiaOpen Targets
0.21Weak
acute myeloid leukemiaOpen Targets
0.20Weak
small cell lung carcinomaOpen Targets
0.20Weak
hypothyroidismOpen Targets
0.20Weak
non-small cell lung carcinomaOpen Targets
0.19Weak
lung adenocarcinomaOpen Targets
0.19Weak
urinary bladder carcinomaOpen Targets
0.19Weak
hepatocellular carcinomaOpen Targets
0.19Weak
prostate adenocarcinomaOpen Targets
0.19Weak
pancreatic ductal adenocarcinomaOpen Targets
0.19Weak
oral squamous cell carcinomaOpen Targets
0.19Weak
colorectal adenocarcinomaOpen Targets
0.19Weak
cutaneous melanomaOpen Targets
0.19Weak
breast carcinomaOpen Targets
0.19Weak
lymphoid neoplasmOpen Targets
0.19Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TCF4Protein interaction91%PAX5Protein interaction86%TCF12Protein interaction76%TCF3Protein interaction74%ID1Protein interaction67%IRX1Shared pathway27%
Tissue Expression6 tissues
Lung
100%
Ovary
87%
Heart
62%
Liver
31%
Brain
18%
Bone Marrow
3%
Gene Interaction Network
Click a node to explore
ID3TCF4PAX5TCF12TCF3ID1IRX1
PROTEIN STRUCTURE
Preparing viewer…
PDB2LFH · NMR
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.86LoF Tolerant
pLIⓘ
0.51Intermediate
Observed/Expected LoF0.33 [0.15–0.86]
RankingsWhere ID3 stands among ~20K protein-coding genes
  • #3,411of 20,598
    Most Researched136 · top quartile
  • #7,591of 17,882
    Most Constrained (LOEUF)0.86
Genes detectedID3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
An NK-like CAR T cell transition in CAR T cell dysfunction.
PMID: 34861191
Cell · 2021
1.00
2
Single-cell RNA-seq reveals novel interaction between muscle satellite cells and fibro-adipogenic progenitors mediated with FGF7 signalling.
PMID: 38751367
J Cachexia Sarcopenia Muscle · 2024
0.90
3
The nuclear factor ID3 endows macrophages with a potent anti-tumour activity.
PMID: 38326607
Nature · 2024
0.80
4
Genetic subgroups inform on pathobiology in adult and pediatric Burkitt lymphoma.
PMID: 36201743
Blood · 2023
0.70
5
Burkitt lymphoma pathogenesis and therapeutic targets from structural and functional genomics.
PMID: 22885699
Nature · 2012
0.60