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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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ID4
inhibitor of DNA binding 4
Chromosome 6 · 6p22.3
NCBI Gene: 3400Ensembl: ENSG00000172201.13HGNC: HGNC:5363UniProt: P47928
114PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
negative regulation of DNA-templated transcriptionprotein bindingtranscription regulator inhibitor activitynegative regulation of transcription by RNA polymerase IIchronic obstructive pulmonary diseaseendometriosisasthmabasal cell carcinoma
✦AI Summary

ID4 (Inhibitor of DNA Binding 4) is a transcriptional regulator that functions as a dominant-negative inhibitor of basic helix-loop-helix (bHLH) transcription factors by forming heterodimers that prevent their DNA binding and transcriptional activity 1. Unlike other ID family members (ID1-3) that promote oncogenesis, ID4 displays distinct, context-dependent functions across development and disease 1. During development, ID4 regulates neurogenesis, lymphoid organogenesis, mammary gland development, and spermatogenesis 2, while promoting stem cell survival and differentiation timing 1. In mammary epithelium, ID4 controls luminal lineage commitment and developmental pathways 3. Mechanistically, ID4 expression is regulated through an NAD+-SIRT2-H3K18Ac axis, where SIRT2-mediated histone acetylation at H3K18 influences ID4 levels 4. ID4 is epigenetically silenced in advanced cancers including prostate cancer through EZH2-dependent H3K27me3 marking and promoter methylation 5, yet paradoxically overexpressed in some basal-like breast cancers where it may suppress BRCA1 function and confer poor prognosis 3. ID4 gene polymorphisms may influence bone metabolism in menopausal women 6. These findings position ID4 as a lineage-dependent regulator with both tumor-suppressive and proto-oncogenic roles depending on cellular context.

Sources cited
1
ID4 functions as dominant-negative inhibitor of bHLH factors and displays distinct roles compared to ID1-3, including tumor-suppressive function
PMID: 25512197
2
ID4 participates in neurogenesis, lymphoid organogenesis, mammary gland development, and spermatogenesis during development
PMID: 11840321
3
ID4 controls luminal lineage commitment in mammary epithelium and is overexpressed in basal-like breast cancers where it may suppress BRCA1
PMID: 27412917
4
ID4 expression is regulated through NAD+-SIRT2-H3K18Ac axis in oligodendrocyte progenitor cells
PMID: 35264567
5
ID4 is epigenetically silenced in prostate cancer through EZH2-dependent H3K27me3 marking and DNA methylation
PMID: 25115397
6
ID4 gene polymorphisms may influence bone mineral density in menopausal women
PMID: 25632614
Disease Associationsⓘ20
chronic obstructive pulmonary diseaseOpen Targets
0.50Moderate
endometriosisOpen Targets
0.49Moderate
asthmaOpen Targets
0.45Moderate
basal cell carcinomaOpen Targets
0.43Moderate
diabetes mellitusOpen Targets
0.41Moderate
type 2 diabetes mellitusOpen Targets
0.40Moderate
ulcerative colitisOpen Targets
0.39Weak
Abnormality of the skeletal systemOpen Targets
0.37Weak
childhood onset asthmaOpen Targets
0.34Weak
ovarian dysfunctionOpen Targets
0.33Weak
Ovarian EndometriosisOpen Targets
0.33Weak
musculoskeletal system diseaseOpen Targets
0.30Weak
atrial fibrillationOpen Targets
0.26Weak
endometriosis of pelvic peritoneumOpen Targets
0.25Weak
spondylolisthesisOpen Targets
0.25Weak
Chronic Obstructive AsthmaOpen Targets
0.24Weak
multinodular goiterOpen Targets
0.23Weak
SplenomegalyOpen Targets
0.22Weak
alcohol drinkingOpen Targets
0.21Weak
circadian rhythm sleep disorderOpen Targets
0.19Weak
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TCF3Protein interaction99%TCF4Protein interaction98%TCF12Protein interaction92%EGR2Protein interaction92%ID2Protein interaction92%OLIG1Protein interaction91%
Tissue Expression6 tissues
Brain
100%
Ovary
47%
Heart
22%
Lung
17%
Liver
5%
Bone Marrow
4%
Gene Interaction Network
Click a node to explore
ID4TCF3TCF4TCF12EGR2ID2OLIG1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt P47928
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.94LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.55 [0.88–1.94]
RankingsWhere ID4 stands among ~20K protein-coding genes
  • #4,150of 20,598
    Most Researched114 · top quartile
  • #17,542of 17,882
    Most Constrained (LOEUF)1.94
Genes detectedID4
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Restoring nuclear entry of Sirtuin 2 in oligodendrocyte progenitor cells promotes remyelination during ageing.
PMID: 35264567
Nat Commun · 2022
1.00
2
Menke-Hennekam syndrome; delineation of domain-specific subtypes with distinct clinical and DNA methylation profiles.
PMID: 38553851
HGG Adv · 2024
0.90
3
Inhibitor of differentiation 4 (ID4): From development to cancer.
PMID: 25512197
Biochim Biophys Acta · 2015
0.80
4
ID4 controls luminal lineage commitment in normal mammary epithelium and inhibits BRCA1 function in basal-like breast cancer.
PMID: 27412917
Endocr Relat Cancer · 2016
0.70
5
Id and development.
PMID: 11840321
Oncogene · 2001
0.60