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GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
IKZF1
IKAROS family zinc finger 1
Chromosome 7 Β· 7p12.2
NCBI Gene: 10320Ensembl: ENSG00000185811.21HGNC: HGNC:13176UniProt: A0A2R8Y4D3
398PubMed Papers
21Diseases
0Drugs
25Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
RESEARCH IMPACT
Highly StudiedTrending
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingnucleusnucleoplasmpericentric heterochromatinpancytopenia due to IKZF1 mutationsacute lymphoblastic leukemiaT-cell acute lymphoblastic leukemiacommon variable immunodeficiency
✦AI Summary

IKZF1 (Ikaros family zinc finger 1) is a lymphoid transcription factor that serves as a master regulator of hematopoietic cell differentiation, particularly in B and T cell development 1. The protein functions as a sequence-specific DNA-binding transcription factor that binds gamma-satellite DNA and regulates gene expression through both HDAC-dependent and HDAC-independent mechanisms, targeting chr7-remodeling complexes NuRD and BAF to specific genomic loci 2. In regulatory T cells, IKZF1 associates with Foxp3 to repress gene expression and maintain immune tolerance; disruption of this interaction increases interferon-Ξ³ production and causes systemic autoimmunity 3. Clinically, IKZF1 deletions are strongly associated with poor prognosis in pediatric B-cell precursor acute lymphoblastic leukemia (ALL), particularly when co-occurring with deletions in CDKN2A, CDKN2B, PAX5, or PAR1 (IKZF1plus phenotype), with 5-year event-free survival of only 53% 45. IKZF1 is therapeutically targetable through cereblon-dependent degradation: lenalidomide and pomalidomide bind cereblon to selectively degrade IKZF1 and IKZF3, with this mechanism contributing to efficacy in multiple myeloma and myelodysplastic syndromes 678. Function is isoform-specific and can be modulated by dominant-negative inactive isoforms.

Sources cited
1
IKZF1 is a transcription regulator of hematopoietic cell differentiation
PMID: 17934067
2
IKZF1 binds gamma-satellite DNA and function is isoform-specific
PMID: 17135265
3
IKZF1 associates with Foxp3 in Treg cells to repress gene expression and maintain immune tolerance
PMID: 39111316
4
IKZF1 deletions co-occurring with other deletions (IKZF1plus) confer very poor prognosis in pediatric B-cell precursor ALL with 53% 5-year event-free survival
PMID: 29498923
5
IKZF1 deletion is strongly associated with poor outcome in B-cell precursor ALL
PMID: 19129520
6
Lenalidomide causes selective degradation of IKZF1 and IKZF3 through CRBN-CRL4 ubiquitin ligase
PMID: 24292625
7
Lenalidomide-bound cereblon targets IKZF1 and IKZF3 for proteasomal degradation with therapeutic efficacy in multiple myeloma
PMID: 24292623
8
Structural mechanism of lenalidomide-induced IKZF1 degradation through CRL4(CRBN) E3 ubiquitin ligase
PMID: 26909574
Disease Associationsβ“˜21
pancytopenia due to IKZF1 mutationsOpen Targets
0.80Strong
acute lymphoblastic leukemiaOpen Targets
0.70Moderate
T-cell acute lymphoblastic leukemiaOpen Targets
0.57Moderate
common variable immunodeficiencyOpen Targets
0.56Moderate
B-cell acute lymphoblastic leukemiaOpen Targets
0.55Moderate
immunodeficiency diseaseOpen Targets
0.50Moderate
systemic lupus erythematosusOpen Targets
0.47Moderate
Crohn's diseaseOpen Targets
0.45Moderate
acute myeloid leukemiaOpen Targets
0.45Moderate
cutaneous melanomaOpen Targets
0.44Moderate
inflammatory bowel diseaseOpen Targets
0.41Moderate
Oral ulcerOpen Targets
0.38Weak
melanomaOpen Targets
0.38Weak
esophageal adenocarcinomaOpen Targets
0.38Weak
ulcerative colitisOpen Targets
0.38Weak
lymphoid neoplasmOpen Targets
0.37Weak
carcinoma of liver and intrahepatic biliary tractOpen Targets
0.37Weak
lung carcinomaOpen Targets
0.37Weak
Ovarian Endometrioid Adenocarcinoma with Squamous DifferentiationOpen Targets
0.37Weak
pancreatic ductal adenocarcinomaOpen Targets
0.37Weak
Immunodeficiency, common variable, 13UniProt
Pathogenic Variants25
NM_006060.6(IKZF1):c.476A>G (p.Asn159Ser)Pathogenic
Inherited Immunodeficiency Diseases|not provided|Pancytopenia due to IKZF1 mutations|IKZF1-related disorder|Immunodeficiency
β˜…β˜…β˜†β˜†2026β†’ Residue 159
NM_006060.6(IKZF1):c.427C>T (p.Arg143Trp)Likely pathogenic
not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 143
NM_006060.6(IKZF1):c.589+1G>TLikely pathogenic
not provided
β˜…β˜…β˜†β˜†2024
NM_006060.6(IKZF1):c.247C>T (p.Arg83Ter)Pathogenic
not provided|Acute lymphoid leukemia
β˜…β˜…β˜†β˜†2023β†’ Residue 83
NM_006060.6(IKZF1):c.530T>C (p.Leu177Pro)Likely pathogenic
Pancytopenia due to IKZF1 mutations|Acute lymphoid leukemia
β˜…β˜…β˜†β˜†2023β†’ Residue 177
NM_006060.6(IKZF1):c.589+1G>CLikely pathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_006060.6(IKZF1):c.622C>T (p.Arg208Ter)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 208
NM_006060.6(IKZF1):c.485G>A (p.Arg162Gln)Pathogenic
Pancytopenia due to IKZF1 mutations|not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 162
NM_006060.6(IKZF1):c.436_438delinsGGGCTCCCTAA (p.Gln146fs)Likely pathogenic
Acute lymphoid leukemia
β˜…β˜†β˜†β˜†2023β†’ Residue 146
NM_006060.6(IKZF1):c.336_337insGA (p.Pro113fs)Likely pathogenic
Acute lymphoid leukemia
β˜…β˜†β˜†β˜†2023β†’ Residue 113
NM_006060.6(IKZF1):c.450C>A (p.Cys150Ter)Likely pathogenic
Acute lymphoid leukemia
β˜…β˜†β˜†β˜†2023β†’ Residue 150
NM_006060.6(IKZF1):c.475A>T (p.Asn159Tyr)Likely pathogenic
Acute lymphoid leukemia
β˜…β˜†β˜†β˜†2023β†’ Residue 159
NM_006060.6(IKZF1):c.271A>T (p.Lys91Ter)Likely pathogenic
Acute lymphoid leukemia
β˜…β˜†β˜†β˜†2023β†’ Residue 91
NM_006060.6(IKZF1):c.1275dup (p.Leu426fs)Likely pathogenic
Pancytopenia due to IKZF1 mutations
β˜…β˜†β˜†β˜†2023β†’ Residue 426
NM_006060.6(IKZF1):c.10_40+46delLikely pathogenic
Pancytopenia due to IKZF1 mutations
β˜…β˜†β˜†β˜†2023
NM_006060.6(IKZF1):c.1365_1368del (p.Ser455fs)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 455
NM_006060.6(IKZF1):c.356G>C (p.Cys119Ser)Likely pathogenic
not provided
β˜…β˜†β˜†β˜†2021β†’ Residue 119
NM_006060.6(IKZF1):c.546C>A (p.Cys182Ter)Pathogenic
Pancytopenia due to IKZF1 mutations
β˜…β˜†β˜†β˜†2019β†’ Residue 182
NM_006060.6(IKZF1):c.1401C>G (p.Cys467Trp)Likely pathogenic
Inherited Immunodeficiency Diseases
β˜…β˜†β˜†β˜†2019β†’ Residue 467
NM_006060.6(IKZF1):c.565A>G (p.Thr189Ala)Likely pathogenic
Inherited Immunodeficiency Diseases
β˜…β˜†β˜†β˜†2019β†’ Residue 189
View on ClinVar β†—
Related Genes
DDB1Protein interaction100%FOXP3Protein interaction100%CRLF2Protein interaction100%CRBNProtein interaction100%RBBP8Protein interaction100%CHD4Protein interaction97%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
16%
Liver
3%
Brain
3%
Heart
2%
Ovary
1%
Gene Interaction Network
Click a node to explore
IKZF1DDB1FOXP3CRLF2CRBNRBBP8CHD4
PROTEIN STRUCTURE
Preparing viewer…
PDB8RQC Β· 2.15 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.32Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.18 [0.11–0.32]
RankingsWhere IKZF1 stands among ~20K protein-coding genes
  • #737of 20,598
    Most Researched398 Β· top 5%
  • #1,962of 5,498
    Most Pathogenic Variants25
  • #1,288of 17,882
    Most Constrained (LOEUF)0.32 Β· top 10%
Genes detectedIKZF1
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
Transcription factor Ikzf1 associates with Foxp3 to repress gene expression in Treg cells and limit autoimmunity and anti-tumor immunity.
PMID: 39111316
Immunity Β· 2024
1.00
2
Lenalidomide causes selective degradation of IKZF1 and IKZF3 in multiple myeloma cells.
PMID: 24292625
Science Β· 2014
0.90
3
The myeloma drug lenalidomide promotes the cereblon-dependent destruction of Ikaros proteins.
PMID: 24292623
Science Β· 2014
0.80
4
IKZF1
PMID: 29498923
J Clin Oncol Β· 2018
0.70
5
IKZF1 as a potential therapeutic target for dendritic cell-mediated immunotherapy in IgA nephropathy.
PMID: 40336063
Cell Commun Signal Β· 2025
0.68