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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 15 days ago
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INPP4B
inositol polyphosphate-4-phosphatase type II B
Chromosome 4 Β· 4q31.21
NCBI Gene: 8821Ensembl: ENSG00000109452.14HGNC: HGNC:6075UniProt: A0ABJ7H3A1
81PubMed Papers
20Diseases
0Drugs
2Pathogenic Variants
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingcytoplasmphosphatidylinositol-3,4-bisphosphate 4-phosphatase activityphosphatidylinositol biosynthetic processneurodegenerative diseaserisk-taking behaviourhypertensionsubstance-related disorder
✦AI Summary

INPP4B (inositol polyphosphate-4-phosphatase type II B) is a lipid phosphatase that catalyzes hydrolysis of the 4-position phosphate of phosphatidylinositol 3,4-bisphosphate and inositol 1,3,4-trisphosphate 12. The enzyme plays a role in late-stage macropinocytosis by dephosphorylating phosphatidylinositol 3,4-bisphosphate in membrane ruffles 2. INPP4B antagonizes PI3K-AKT/PKB signaling by dephosphorylating phosphoinositides, thereby modulating cell cycle progression and survival 31. INPP4B exhibits paradoxical dual roles in cancer. In hepatocellular carcinoma, prostate cancer, and endometrial cancer, INPP4B overexpression suppresses cell proliferation, migration, invasion, and chemoresistance through PI3K/AKT inhibition 456. However, in pancreatic ductal adenocarcinoma (PDAC), INPP4B overexpression promotes aggressiveness by driving PtdIns(3,5)P2 generation on lysosomes via PIKfyve, triggering TRPML-1-mediated calcium release and enhancing migratory and invasive properties 7. This context-dependent behavior reflects differential mechanisms: tumor-suppressive function primarily involves PI3K/AKT inhibition, while oncogenic function may involve SGK3 signaling and lysosomal exocytosis modulation 8. Clinically, reduced INPP4B expression correlates with advanced tumor stage and poor prognosis in multiple cancers, suggesting therapeutic potential as a tumor suppressor target.

Sources cited
1
INPP4B (inositol polyphosphate-4-phosphatase type II B) is a lipid phosphatase that catalyzes hydrolysis of the 4-position phosphate of phosphatidylinositol 3,4-bisphosphate and inositol 1,3,4-trisphosphate , .
PMID: 24591580
2
However, in pancreatic ductal adenocarcinoma (PDAC), INPP4B overexpression promotes aggressiveness by driving PtdIns(3,5)P2 generation on lysosomes via PIKfyve, triggering TRPML-1-mediated calcium release and enhancing migratory and invasive properties .
PMID: 39120584
3
This context-dependent behavior reflects differential mechanisms: tumor-suppressive function primarily involves PI3K/AKT inhibition, while oncogenic function may involve SGK3 signaling and lysosomal exocytosis modulation .
PMID: 34216856
⚠Limited data available β€” This gene has 3 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜20
neurodegenerative diseaseOpen Targets
0.49Moderate
risk-taking behaviourOpen Targets
0.45Moderate
hypertensionOpen Targets
0.43Moderate
substance-related disorderOpen Targets
0.43Moderate
smoking initiationOpen Targets
0.42Moderate
metabolic syndromeOpen Targets
0.40Weak
major depressive disorderOpen Targets
0.35Weak
dyshidrosisOpen Targets
0.33Weak
preeclampsiaOpen Targets
0.32Weak
obesityOpen Targets
0.32Weak
essential hypertensionOpen Targets
0.31Weak
joint diseaseOpen Targets
0.30Weak
schizophreniaOpen Targets
0.29Weak
attention deficit hyperactivity disorderOpen Targets
0.28Weak
Alzheimer diseaseOpen Targets
0.28Weak
multiple sclerosisOpen Targets
0.28Weak
lysosomal storage diseaseOpen Targets
0.28Weak
Parkinson diseaseOpen Targets
0.28Weak
dysthymic disorderOpen Targets
0.28Weak
ProptosisOpen Targets
0.28Weak
Pathogenic Variants2
NM_001101669.3(INPP4B):c.2267T>C (p.Leu756Pro)Pathogenic
Hypercholesterolemia, familial, 1
β˜†β˜†β˜†β˜†2022β†’ Residue 756
NM_001101669.3(INPP4B):c.1909T>C (p.Cys637Arg)Pathogenic
Hypercholesterolemia, familial, 1
β˜†β˜†β˜†β˜†2022β†’ Residue 637
View on ClinVar β†—
Related Genes
PIK3R3Protein interaction96%INPP4AProtein interaction94%MTMR6Protein interaction94%MTMR2Protein interaction93%MTMR4Protein interaction92%PIK3R1Protein interaction92%
Tissue Expression6 tissues
Heart
100%
Lung
30%
Ovary
15%
Bone Marrow
15%
Brain
15%
Liver
3%
Gene Interaction Network
Click a node to explore
INPP4BPIK3R3INPP4AMTMR6MTMR2MTMR4PIK3R1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt O15327
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.64LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.47 [0.35–0.64]
RankingsWhere INPP4B stands among ~20K protein-coding genes
  • #5,866of 20,598
    Most Researched81
  • #4,355of 5,498
    Most Pathogenic Variants2
  • #4,568of 17,882
    Most Constrained (LOEUF)0.64
Genes detectedINPP4B
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Endosome and INPP4B.
PMID: 26700619
Oncotarget Β· 2016
1.00
2
INPP4B inhibits cell proliferation, invasion and chemoresistance in human hepatocellular carcinoma.
PMID: 31123408
Onco Targets Ther Β· 2019
0.90
3
INPP4B promotes PDAC aggressiveness via PIKfyve and TRPML-1-mediated lysosomal exocytosis.
PMID: 39120584
J Cell Biol Β· 2024
0.80
4
The INPP4B paradox: Like PTEN, but different.
PMID: 34216856
Adv Biol Regul Β· 2021
0.70
5
INPP4B overexpression and c-KIT downregulation in human achalasia.
PMID: 29644781
Neurogastroenterol Motil Β· 2018
0.60