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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
JAM3
junctional adhesion molecule 3
Chromosome 11 Β· 11q25
NCBI Gene: 83700Ensembl: ENSG00000166086.14HGNC: HGNC:15532UniProt: Q9BX67
101PubMed Papers
21Diseases
0Drugs
16Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
GO:0005615cell-cell junctiondesmosomepositive regulation of monocyte extravasationporencephaly-microcephaly-bilateral congenital cataract syndromeatrial fibrillationtemporomandibular joint disordernephrotic syndrome
✦AI Summary

JAM3 is a junctional adhesion molecule that functions as a heterotypic cell-cell adhesion mediator, serving as a counter-receptor for JAM2 1. It is expressed across multiple tissues including kidney, brain, placenta, and endothelial cells 1, and its expression increases upon lymphocyte activation 1. JAM3 plays a role in hematopoietic stem cell (HSC) migration and mobilization through downstream signaling from mechanical stress sensors, contributing to myeloid differentiation via the PIEZO1-JAM3-CAPN2 pathway 2. As a tumor suppressor, JAM3 is frequently epigenetically silenced in multiple cancers. In serous ovarian carcinoma, JAM3 suppresses proliferation and invasion by inhibiting the PI3K/AKT signaling pathway 3. In esophageal cancer, JAM3 methylation correlates with poor prognosis and promotes tumorigenesis through Wnt/Ξ²-catenin pathway activation 4. JAM3 methylation serves as a biomarker for cervical cancer risk stratification, demonstrating superior sensitivity (83.8-91.2%) and specificity (95.3-95.8%) compared to HPV testing alone in identifying cervical intraepithelial neoplasia grade 2+ lesions 567. Mutations in JAM3 are associated with hemorrhagic destruction of the brain with subependymal calcification and cataracts, highlighting its importance in vascular and neural integrity.

Sources cited
1
JAM3 is a JAM family member that binds to JAM2, is expressed in endothelial cells and multiple tissues, and is upregulated on activated lymphocytes
PMID: 11590146
2
JAM3 mediates downstream signaling from PIEZO1-induced shear stress sensing in HSCs, affecting proliferation and myeloid differentiation
PMID: 41482519
3
JAM3 acts as a tumor suppressor in serous ovarian carcinoma by inhibiting PI3K/AKT pathway, and is epigenetically silenced in cancer
PMID: 40711818
4
JAM3 is frequently methylated in esophageal cancer, suppresses tumor growth by inhibiting Wnt/Ξ²-catenin signaling, and methylation is a prognostic marker
PMID: 36461092
5
PAX1/JAM3 methylation testing demonstrates 83.8% sensitivity and 95.8% specificity for identifying CIN2+ lesions in ASC-US cases
PMID: 39528979
6
JAM3 methylation testing shows 89.0% sensitivity and 95.3% specificity for identifying CIN2+ lesions in HPV 16/18-positive women
PMID: 39726021
7
JAM3 methylation detection outperforms traditional cytology and HPV testing in diagnosing high-grade squamous intraepithelial lesions
PMID: 39696066
Disease Associationsβ“˜21
porencephaly-microcephaly-bilateral congenital cataract syndromeOpen Targets
0.80Strong
atrial fibrillationOpen Targets
0.38Weak
temporomandibular joint disorderOpen Targets
0.28Weak
nephrotic syndromeOpen Targets
0.28Weak
blood vessel replacementOpen Targets
0.24Weak
bronchial diseaseOpen Targets
0.24Weak
corneal dystrophyOpen Targets
0.24Weak
genetic disorderOpen Targets
0.19Weak
schizophreniaOpen Targets
0.11Weak
neoplasmOpen Targets
0.11Weak
breast cancerOpen Targets
0.08Suggestive
infectionOpen Targets
0.08Suggestive
colorectal carcinomaOpen Targets
0.08Suggestive
HydrocephalusOpen Targets
0.08Suggestive
laryngeal squamous cell carcinomaOpen Targets
0.08Suggestive
arthritisOpen Targets
0.08Suggestive
cholangiocarcinomaOpen Targets
0.07Suggestive
Miyoshi myopathyOpen Targets
0.07Suggestive
azoospermiaOpen Targets
0.07Suggestive
esophageal cancerOpen Targets
0.07Suggestive
Hemorrhagic destruction of the brain with subependymal calcification and cataractsUniProt
Pathogenic Variants16
NM_032801.5(JAM3):c.612+1G>TPathogenic
Porencephaly-microcephaly-bilateral congenital cataract syndrome
β˜…β˜…β˜†β˜†2024
NM_032801.5(JAM3):c.230_231del (p.Tyr77fs)Pathogenic
not provided|Porencephaly-microcephaly-bilateral congenital cataract syndrome
β˜…β˜…β˜†β˜†2022β†’ Residue 77
NM_032801.5(JAM3):c.406C>T (p.Gln136Ter)Likely pathogenic
Porencephaly-microcephaly-bilateral congenital cataract syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 136
NM_032801.5(JAM3):c.690T>G (p.Cys230Trp)Likely pathogenic
Porencephaly-microcephaly-bilateral congenital cataract syndrome
β˜…β˜†β˜†β˜†2023β†’ Residue 230
NM_032801.5(JAM3):c.358C>T (p.Arg120Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 120
NM_032801.5(JAM3):c.572dup (p.Asn192fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2022β†’ Residue 192
NM_032801.5(JAM3):c.745del (p.Val249fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2021β†’ Residue 249
NM_032801.5(JAM3):c.745dup (p.Val249fs)Pathogenic
not provided|Porencephaly-microcephaly-bilateral congenital cataract syndrome
β˜…β˜†β˜†β˜†2021β†’ Residue 249
NM_032801.5(JAM3):c.410-1G>APathogenic
Porencephaly-microcephaly-bilateral congenital cataract syndrome
β˜…β˜†β˜†β˜†2020
NM_032801.5(JAM3):c.2T>A (p.Met1Lys)Likely pathogenic
Porencephaly-microcephaly-bilateral congenital cataract syndrome
β˜…β˜†β˜†β˜†2020β†’ Residue 1
NM_032801.5(JAM3):c.1A>G (p.Met1Val)Pathogenic
Porencephaly-microcephaly-bilateral congenital cataract syndrome
β˜…β˜†β˜†β˜†2019β†’ Residue 1
NM_032801.5(JAM3):c.346G>A (p.Glu116Lys)Pathogenic
Porencephaly-microcephaly-bilateral congenital cataract syndrome
β˜…β˜†β˜†β˜†β†’ Residue 116
NM_032801.5(JAM3):c.231del (p.Thr76_Tyr77insTer)Likely pathogenic
Porencephaly-microcephaly-bilateral congenital cataract syndrome
β˜…β˜†β˜†β˜†β†’ Residue 76
NM_032801.5(JAM3):c.256+1260G>CLikely pathogenic
Porencephaly-microcephaly-bilateral congenital cataract syndrome
β˜…β˜†β˜†β˜†
NM_032801.5(JAM3):c.2T>G (p.Met1Arg)Pathogenic
Porencephaly-microcephaly-bilateral congenital cataract syndrome
β˜†β˜†β˜†β˜†2013β†’ Residue 1
NM_032801.5(JAM3):c.656G>A (p.Cys219Tyr)Pathogenic
Porencephaly-microcephaly-bilateral congenital cataract syndrome
β˜†β˜†β˜†β˜†2013β†’ Residue 219
View on ClinVar β†—
Related Genes
ITGB2Protein interaction100%TJP1Protein interaction100%ITGAMProtein interaction100%PARD3Protein interaction98%IGSF5Protein interaction97%RAC3Protein interaction91%
Tissue Expression6 tissues
Brain
100%
Ovary
63%
Heart
58%
Lung
28%
Bone Marrow
10%
Liver
5%
Gene Interaction Network
Click a node to explore
JAM3ITGB2TJP1ITGAMPARD3IGSF5RAC3
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9BX67
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.00LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.72 [0.52–1.00]
RankingsWhere JAM3 stands among ~20K protein-coding genes
  • #4,723of 20,598
    Most Researched101 Β· top quartile
  • #2,399of 5,498
    Most Pathogenic Variants16
  • #9,705of 17,882
    Most Constrained (LOEUF)1.00
Genes detectedJAM3
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Shear stress governs hematopoietic stem cell fate to promote inflammation-induced aging.
PMID: 41482519
Nat Aging Β· 2026
1.00
2
Cloning of human junctional adhesion molecule 3 (JAM3) and its identification as the JAM2 counter-receptor.
PMID: 11590146
J Biol Chem Β· 2001
0.90
3
Cervical cancer screening: efficacy of PAX1 and JAM3 methylation assay in the triage of atypical squamous cell of undetermined significance (ASC-US).
PMID: 39528979
BMC Cancer Β· 2024
0.80
4
Epigenetic silencing of JAM3 promoted progression in serous ovarian carcinoma through PI3K/AKT pathway.
PMID: 40711818
Epigenomics Β· 2025
0.70
5
Cancer-associated fibroblasts in colorectal cancer.
PMID: 34839457
Clin Transl Oncol Β· 2022
0.60