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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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KCNN1
potassium calcium-activated channel subfamily N member 1
Chromosome 19 · 19p13.11
NCBI Gene: 3780Ensembl: ENSG00000105642.16HGNC: HGNC:6290UniProt: A0A804HIF9
30PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Ion ChannelTransporter
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
small conductance calcium-activated potassium channel activitypotassium ion transmembrane transportinward rectifier potassium channel activityplasma membraneneurodegenerative diseaseneoplasmcancerbreast cancer
✦AI Summary

KCNN1 encodes SK1, a small-conductance calcium-activated potassium channel that mediates voltage-independent potassium transport across cell membranes through constitutive interaction with calmodulin 1. The channel exhibits characteristic properties including voltage-independent activation, calcium concentration-dependent activation, and approximately 3 picosiemens single-channel conductance 1. KCNN1 functions primarily in regulating neuronal excitability by contributing to afterhyperpolarization currents in sensory neurons, with reduced expression leading to increased neuronal excitability 1. The gene shows complex transcription patterns with multiple splice variants that may fine-tune channel function 2. Beyond neuronal function, KCNN1 demonstrates tissue-specific expression in cardiac myocytes where it affects action potential duration and arrhythmic tendency 3, and in reproductive tissues including the myometrium 4. Disease relevance includes neuropathic pain, where KCNN1 downregulation contributes to pain hypersensitivity 1, and cancer, where it promotes breast cancer proliferation and metastasis through interaction with ERLIN2 and Cyclin B1 5. In Ewing sarcoma, KCNN1 overexpression driven by EWS::FLI1 fusion proteins regulates cell proliferation and calcium signaling 6.

Sources cited
1
KCNN1 mediates calcium-activated potassium transport, regulates neuronal excitability, and its downregulation contributes to neuropathic pain
PMID: 37012681
2
KCNN1 promotes breast cancer proliferation and metastasis through ERLIN2-mediated Cyclin B1 stabilization
PMID: 37831636
3
KCNN1 is expressed in cardiac myocytes and affects action potential duration and arrhythmic tendency
PMID: 37122223
4
KCNN1 overexpression in Ewing sarcoma is driven by EWS::FLI1 and regulates cell proliferation and calcium signaling
PMID: 39487324
5
KCNN1 exhibits complex transcription patterns with multiple splice variants
PMID: 11267657
6
KCNN1 is expressed in myometrial tissue
PMID: 33158376
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.34Weak
neoplasmOpen Targets
0.11Weak
cancerOpen Targets
0.10Weak
breast cancerOpen Targets
0.10Suggestive
atrial fibrillationOpen Targets
0.09Suggestive
melanomaOpen Targets
0.09Suggestive
hepatocellular carcinomaOpen Targets
0.08Suggestive
COVID-19Open Targets
0.07Suggestive
colitisOpen Targets
0.07Suggestive
influenzaOpen Targets
0.06Suggestive
asthmaOpen Targets
0.06Suggestive
dengue diseaseOpen Targets
0.05Suggestive
triple-negative breast cancerOpen Targets
0.05Suggestive
breast neoplasmOpen Targets
0.04Suggestive
hemoglobin D diseaseOpen Targets
0.04Suggestive
Ewing sarcomaOpen Targets
0.04Suggestive
acute myeloid leukemiaOpen Targets
0.04Suggestive
viral diseaseOpen Targets
0.04Suggestive
overhydrated hereditary stomatocytosisOpen Targets
0.04Suggestive
prostate cancerOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PRKCAProtein interaction98%CSN3Protein interaction98%KCNN2Protein interaction96%PRKCBProtein interaction95%KCNMA1Protein interaction94%KCNMB2Protein interaction94%
Tissue Expression6 tissues
Brain
100%
Ovary
11%
Heart
2%
Liver
2%
Bone Marrow
2%
Lung
1%
Gene Interaction Network
Click a node to explore
KCNN1PRKCACSN3KCNN2PRKCBKCNMA1KCNMB2
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q92952
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.66LoF Tolerant
pLIⓘ
0.05Tolerant
Observed/Expected LoF0.45 [0.31–0.66]
RankingsWhere KCNN1 stands among ~20K protein-coding genes
  • #11,952of 20,598
    Most Researched30
  • #4,815of 17,882
    Most Constrained (LOEUF)0.66
Genes detectedKCNN1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
A sensory neuron-specific long non-coding RNA reduces neuropathic pain by rescuing KCNN1 expression.
PMID: 37012681
Brain · 2023
1.00
2
KCNN1 promotes proliferation and metastasis of breast cancer via ERLIN2-mediated stabilization and K63-dependent ubiquitination of Cyclin B1.
PMID: 37831636
Carcinogenesis · 2023
0.90
3
Targeting Ca
PMID: 40484048
Biochim Biophys Acta Mol Basis Dis · 2025
0.80
4
Chimeric protein EWS::FLI1 drives cell proliferation in Ewing Sarcoma via aberrant expression of KCNN1/SK1 and dysregulation of calcium signaling.
PMID: 39487324
Oncogene · 2025
0.70
5
Gene structure and chromosome mapping of the human small-conductance calcium-activated potassium channel SK1 gene (KCNN1).
PMID: 10516439
Cytogenet Cell Genet · 1999
0.60