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GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
KCNQ2
potassium voltage-gated channel subfamily Q member 2
Chromosome 20 Β· 20q13.33
NCBI Gene: 3785Ensembl: ENSG00000075043.21HGNC: HGNC:6296UniProt: A0A0D9SGG3
188PubMed Papers
22Diseases
9Drugs
755Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedIon ChannelTransporter
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
voltage-gated potassium channel activityprotein bindingpotassium ion transmembrane transportcalmodulin bindingBenign familial neonatal seizuresgenetic developmental and epileptic encephalopathySeizureseizures, benign familial neonatal, 1
✦AI Summary

KCNQ2 encodes the pore-forming subunit of voltage-gated potassium M-channels, which assemble with KCNQ3 as heterotetramers to generate the M-current 123. This slowly activating potassium conductance critically regulates neuronal excitability by controlling resting membrane potential, shaping action potentials, and impeding repetitive firing 42. The channel exhibits selective cation permeability (K⁺ > Rb⁺ > Cs⁺ > Na⁺) and is suppressed by muscarinic acetylcholine receptor activation 25. KCNQ2 dysfunction causes diverse neurodevelopmental disorders ranging from benign familial neonatal seizures to severe epileptic encephalopathy and autism spectrum disorders 67. Pathogenic variants reduce M-current conductance, producing hyperexcitable neuronal networks with increased burst duration and synaptic connectivity 7. However, emerging evidence suggests KCNQ2 loss-of-function also impairs early neuronal maturation by causing depolarized resting potentials and reduced action potential generation 8. Beyond seizure disorders, KCNQ2 dysfunction contributes to motor neuron hyperexcitability in ALS/FTD through TDP-43-dependent mis-splicing 9. KCNQ2 activators including retigabine, cannabidiol, and investigational compounds show therapeutic potential by restoring channel function and rescuing hyperexcitable phenotypes 10117.

Sources cited
1
KCNQ2 encodes the pore-forming subunit of voltage-gated potassium M-channels, which assemble with KCNQ3 as heterotetramers to generate the M-current , , .
PMID: 24277843
2
KCNQ2 encodes the pore-forming subunit of voltage-gated potassium M-channels, which assemble with KCNQ3 as heterotetramers to generate the M-current , , .
PMID: 28793216
3
KCNQ2 encodes the pore-forming subunit of voltage-gated potassium M-channels, which assemble with KCNQ3 as heterotetramers to generate the M-current , , .
PMID: 9836639
4
This slowly activating potassium conductance critically regulates neuronal excitability by controlling resting membrane potential, shaping action potentials, and impeding repetitive firing , .
PMID: 14534157
5
The channel exhibits selective cation permeability (K⁺ > Rb⁺ > Cs⁺ > Na⁺) and is suppressed by muscarinic acetylcholine receptor activation , .
PMID: 10684873
6
KCNQ2 dysfunction causes diverse neurodevelopmental disorders ranging from benign familial neonatal seizures to severe epileptic encephalopathy and autism spectrum disorders , .
PMID: 36225112
7
KCNQ2 dysfunction causes diverse neurodevelopmental disorders ranging from benign familial neonatal seizures to severe epileptic encephalopathy and autism spectrum disorders , .
PMID: 41015095
8
However, emerging evidence suggests KCNQ2 loss-of-function also impairs early neuronal maturation by causing depolarized resting potentials and reduced action potential generation .
PMID: 40998073
9
Beyond seizure disorders, KCNQ2 dysfunction contributes to motor neuron hyperexcitability in ALS/FTD through TDP-43-dependent mis-splicing .
PMID: 41174170
10
KCNQ2 activators including retigabine, cannabidiol, and investigational compounds show therapeutic potential by restoring channel function and rescuing hyperexcitable phenotypes , , .
PMID: 37857637
11
KCNQ2 activators including retigabine, cannabidiol, and investigational compounds show therapeutic potential by restoring channel function and rescuing hyperexcitable phenotypes , , .
PMID: 32884139
Disease Associationsβ“˜22
Benign familial neonatal seizuresOpen Targets
0.84Strong
genetic developmental and epileptic encephalopathyOpen Targets
0.72Strong
SeizureOpen Targets
0.68Moderate
seizures, benign familial neonatal, 1Open Targets
0.68Moderate
epilepsyOpen Targets
0.65Moderate
Epileptic encephalopathyOpen Targets
0.62Moderate
multiple sclerosisOpen Targets
0.59Moderate
developmental and epileptic encephalopathyOpen Targets
0.56Moderate
Myasthenia gravisOpen Targets
0.56Moderate
Lambert-Eaton myasthenic syndromeOpen Targets
0.55Moderate
genetic disorderOpen Targets
0.55Moderate
neurodegenerative diseaseOpen Targets
0.55Moderate
MyokymiaOpen Targets
0.54Moderate
infantile spasmsOpen Targets
0.50Moderate
Intellectual disabilityOpen Targets
0.49Moderate
developmental and epileptic encephalopathy, 1Open Targets
0.47Moderate
infantile epileptic-dyskinetic encephalopathyOpen Targets
0.47Moderate
Spasticity - intellectual disability - X-linked epilepsyOpen Targets
0.47Moderate
Muscle weaknessOpen Targets
0.46Moderate
congenital myasthenic syndromeOpen Targets
0.43Moderate
Developmental and epileptic encephalopathy 7UniProt
Seizures, benign familial neonatal 1UniProt
Pathogenic Variants755
NM_172107.4(KCNQ2):c.1093C>T (p.Arg365Ter)Pathogenic
not provided|Seizures, benign familial neonatal, 1|Early-infantile DEE
β˜…β˜…β˜†β˜†2026β†’ Residue 365
NM_172107.4(KCNQ2):c.640C>T (p.Arg214Trp)Pathogenic
Seizures, benign familial neonatal, 1|not provided|Complex neurodevelopmental disorder|Neonatal/infantile epilepsy syndrome|Early-infantile DEE
β˜…β˜…β˜†β˜†2026β†’ Residue 214
NM_172107.4(KCNQ2):c.1639C>T (p.Arg547Trp)Pathogenic
not provided|Seizures, benign familial neonatal, 1|Seizure|Early-infantile DEE
β˜…β˜…β˜†β˜†2026β†’ Residue 547
NM_172107.4(KCNQ2):c.1342C>T (p.Arg448Ter)Pathogenic
Seizures, benign familial neonatal, 1|not provided|Seizure|Inborn genetic diseases|Developmental and epileptic encephalopathy, 7|Early-infantile DEE
β˜…β˜…β˜†β˜†2026β†’ Residue 448
NM_172107.4(KCNQ2):c.1050C>A (p.Asn350Lys)Likely pathogenic
Seizures, benign familial neonatal, 1|Early-infantile DEE
β˜…β˜…β˜†β˜†2026β†’ Residue 350
NM_172107.4(KCNQ2):c.997C>T (p.Arg333Trp)Pathogenic
not provided|Developmental and epileptic encephalopathy, 7|Complex neurodevelopmental disorder|KCNQ2-Related Disorders|Seizure|Early-infantile DEE|Developmental and epileptic encephalopathy, 7;Seizures, benign familial neonatal, 1
β˜…β˜…β˜†β˜†2026β†’ Residue 333
NM_172107.4(KCNQ2):c.1742G>A (p.Arg581Gln)Pathogenic
not provided|Epileptic encephalopathy|Seizures, benign familial neonatal, 1|Inborn genetic diseases|Complex neurodevelopmental disorder|Early-infantile DEE
β˜…β˜…β˜†β˜†2026β†’ Residue 581
NM_172107.4(KCNQ2):c.881C>T (p.Ala294Val)Pathogenic
not provided|Developmental and epileptic encephalopathy, 7|Epileptic encephalopathy|KCNQ2-Related Disorders|Seizures, benign familial neonatal, 1|Complex neurodevelopmental disorder|Seizure|Early-infantile DEE
β˜…β˜…β˜†β˜†2025β†’ Residue 294
NM_172107.4(KCNQ2):c.793G>T (p.Ala265Ser)Pathogenic
Seizures, benign familial neonatal, 1;Developmental and epileptic encephalopathy, 7|Developmental and epileptic encephalopathy, 7
β˜…β˜…β˜†β˜†2025β†’ Residue 265
NM_172107.4(KCNQ2):c.553G>A (p.Ala185Thr)Pathogenic
not provided|Seizures, benign familial neonatal, 1;Developmental and epileptic encephalopathy, 7|Seizures, benign familial neonatal, 1|Developmental and epileptic encephalopathy, 7|Early-infantile DEE
β˜…β˜…β˜†β˜†2025β†’ Residue 185
NM_172107.4(KCNQ2):c.1023G>C (p.Gln341His)Pathogenic
not provided|Early-infantile DEE|Developmental and epileptic encephalopathy, 7
β˜…β˜…β˜†β˜†2025β†’ Residue 341
NM_172107.4(KCNQ2):c.811G>C (p.Gly271Arg)Pathogenic
not provided|Developmental and epileptic encephalopathy, 7|Early-infantile DEE
β˜…β˜…β˜†β˜†2025β†’ Residue 271
NM_172107.4(KCNQ2):c.632T>C (p.Met211Thr)Pathogenic
Developmental and epileptic encephalopathy, 7|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 211
NM_172107.4(KCNQ2):c.1A>G (p.Met1Val)Pathogenic
not provided|Seizures, benign familial neonatal, 1|Early-infantile DEE
β˜…β˜…β˜†β˜†2025β†’ Residue 1
NM_172107.4(KCNQ2):c.868G>A (p.Gly290Ser)Pathogenic
not provided|Developmental and epileptic encephalopathy, 7|Developmental and epileptic encephalopathy, 7;Seizures, benign familial neonatal, 1|Early-infantile DEE
β˜…β˜…β˜†β˜†2025β†’ Residue 290
NM_172107.4(KCNQ2):c.998G>A (p.Arg333Gln)Pathogenic
not provided|Seizures, benign familial neonatal, 1|Complex neurodevelopmental disorder|Seizure|Early-infantile DEE
β˜…β˜…β˜†β˜†2025β†’ Residue 333
NM_172107.4(KCNQ2):c.1229dup (p.Pro411fs)Pathogenic
not provided|Seizures, benign familial neonatal, 1|Inborn genetic diseases|Early-infantile DEE
β˜…β˜…β˜†β˜†2025β†’ Residue 411
NM_172107.4(KCNQ2):c.1657C>T (p.Arg553Trp)Pathogenic
not provided|Seizures, benign familial neonatal, 1|Developmental and epileptic encephalopathy, 7|Seizure|Early-infantile DEE
β˜…β˜…β˜†β˜†2025β†’ Residue 553
NM_172107.4(KCNQ2):c.1204G>T (p.Gly402Ter)Pathogenic
not provided|Early-infantile DEE
β˜…β˜…β˜†β˜†2025β†’ Residue 402
NM_172107.4(KCNQ2):c.285C>A (p.Tyr95Ter)Pathogenic
not provided|Early-infantile DEE|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 95
View on ClinVar β†—
Drug Targets9
AMIFAMPRIDINEApproved
Voltage-gated potassium channel blocker
Myasthenia gravis
AMIFAMPRIDINE PHOSPHATEApproved
Voltage-gated potassium channel blocker
Lambert-Eaton myasthenic syndrome
DALFAMPRIDINEApproved
Voltage-gated potassium channel blocker
multiple sclerosis
EZOGABINEApproved
KCNQ (Kv7) potassium channel opener
Seizure
FLINDOKALNERPhase III
Voltage-gated potassium channel KCNQ3/KCNQ4 activator
nervous system injury
GUANIDINEPhase III
Voltage-gated potassium channel blocker
neuroendocrine neoplasm
GUANIDINE HYDROCHLORIDEApproved
Voltage-gated potassium channel blocker
Myasthenia gravis
NERISPIRDINEPhase II
Voltage-gated potassium channel blocker
multiple sclerosis
TEDISAMILApproved
Voltage-gated potassium channel blocker
cardiac arrhythmia
Related Genes
KCNE3Protein interaction100%SCN1BProtein interaction100%SPTBN4Protein interaction100%SCN3AProtein interaction100%NFASCProtein interaction100%SCN9AProtein interaction100%
Tissue Expression6 tissues
Brain
100%
Liver
0%
Bone Marrow
0%
Ovary
0%
Lung
0%
Heart
0%
Gene Interaction Network
Click a node to explore
KCNQ2KCNE3SCN1BSPTBN4SCN3ANFASCSCN9A
PROTEIN STRUCTURE
Preparing viewer…
PDB5J03 Β· 2.00 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.29Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.19 [0.13–0.29]
RankingsWhere KCNQ2 stands among ~20K protein-coding genes
  • #2,279of 20,598
    Most Researched188 Β· top quartile
  • #267of 1,025
    FDA-Approved Drug Targets6
  • #59of 5,498
    Most Pathogenic Variants755 Β· top 5%
  • #1,099of 17,882
    Most Constrained (LOEUF)0.29 Β· top 10%
Genes detectedKCNQ2
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
PMID: 20437616
1.00
2
Potassium channels and epilepsy.
PMID: 36225112
Acta Neurol Scand Β· 2022
0.90
3
TDP-43-dependent mis-splicing of KCNQ2 triggers intrinsic neuronal hyperexcitability in ALS/FTD.
PMID: 41174170
Nat Neurosci Β· 2025
0.80
4
Constitutive opening of the Kv7.2 pore activation gate causes
PMID: 39602259
Proc Natl Acad Sci U S A Β· 2024
0.76
5
Ligand activation mechanisms of human KCNQ2 channel.
PMID: 37857637
Nat Commun Β· 2023
0.70