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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
KCTD7
potassium channel tetramerization domain containing 7
Chromosome 7 Β· 7q11.21
NCBI Gene: 154881Ensembl: ENSG00000243335.10HGNC: HGNC:21957UniProt: Q96MP8
43PubMed Papers
21Diseases
0Drugs
37Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingintracellular glutamate homeostasisplasma membranecytoplasmprogressive myoclonic epilepsy type 3neuronal ceroid lipofuscinosisgenetic disorderprogressive myoclonus epilepsy
✦AI Summary

KCTD7 (potassium channel tetramerization domain containing 7) is a neuronal protein involved in controlling cortical neuron excitability and regulating neurovascular patterning. KCTD7 is enriched in specific brain regions during development and localizes to neurons in the inner retina and cerebellar Purkinje cells, where it is absent from vessels themselves 12. The protein functions in intracellular glutamate homeostasis and membrane hyperpolarization, contributing to proper neural circuit function and the development of precise neurovascular units that support neuronal activity 1. KCTD7 mutations cause progressive myoclonic epilepsy (PME), an autosomal-recessive neurodegenerative disorder typically presenting in infancy with severe, drug-resistant seizures, myoclonus, cognitive regression, and ataxia 34. The disease phenotype is variable; some patients stabilize after several years with long survival, while others experience fatal status epilepticus 35. Additional rare phenotypes include neuronal ceroid lipofuscinosis (CLN14) and opsoclonus myoclonus ataxia syndrome 45. Mechanistically, Kctd7 deficiency causes selective Purkinje cell death, cerebellar microvascular defects, and increased retinal vascular branching with functional impairment 12. Recently, KCTD7 was identified as a novel susceptibility locus for multiple system atrophy, a synucleinopathy, suggesting broader neurodegeneration involvement 6. Over 100 cases with KCTD7 variants have been reported, with both recurrent and novel pathogenic variants identified across diverse populations 784.

Sources cited
1
KCTD7 is enriched in specific brain regions during development and localizes to neurons in the inner retina and cerebellar Purkinje cells, where it is absent from vessels themselves , .
PMID: 31175897
2
Recently, KCTD7 was identified as a novel susceptibility locus for multiple system atrophy, a synucleinopathy, suggesting broader neurodegeneration involvement .
PMID: 38701790
⚠Limited data available β€” This gene has 2 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜21
progressive myoclonic epilepsy type 3Open Targets
0.80Strong
neuronal ceroid lipofuscinosisOpen Targets
0.66Moderate
genetic disorderOpen Targets
0.48Moderate
progressive myoclonus epilepsyOpen Targets
0.46Moderate
Progressive myoclonic epilepsyOpen Targets
0.45Moderate
Unverricht-Lundborg diseaseOpen Targets
0.37Weak
Intellectual disabilityOpen Targets
0.33Weak
Epileptic encephalopathyOpen Targets
0.32Weak
Abnormal nasolacrimal system morphologyOpen Targets
0.29Weak
fibula fractureOpen Targets
0.14Weak
tibia fractureOpen Targets
0.12Weak
corneal ulcerOpen Targets
0.07Suggestive
MODYOpen Targets
0.05Suggestive
maturity-onset diabetes of the young type 3Open Targets
0.04Suggestive
maturity-onset diabetes of the young type 10Open Targets
0.04Suggestive
hyperproinsulinemiaOpen Targets
0.03Suggestive
Glycogen storage disease due to hepatic glycogen synthase deficiencyOpen Targets
0.03Suggestive
glycogen storage disorder due to hepatic glycogen synthase deficiencyOpen Targets
0.03Suggestive
familial partial lipodystrophy, Kobberling typeOpen Targets
0.03Suggestive
Familial partial lipodystrophy, KΓΆbberling typeOpen Targets
0.03Suggestive
Epilepsy, progressive myoclonic 3, with or without intracellular inclusionsUniProt
Pathogenic Variants37
NM_153033.5(KCTD7):c.339_340del (p.Asp115fs)Pathogenic
Progressive myoclonic epilepsy type 3
β˜…β˜…β˜†β˜†2025β†’ Residue 115
NM_153033.5(KCTD7):c.631C>T (p.Arg211Ter)Pathogenic
not provided|Inborn genetic diseases|Progressive myoclonic epilepsy type 3|Intellectual disability
β˜…β˜…β˜†β˜†2025β†’ Residue 211
NM_153033.5(KCTD7):c.827A>G (p.Tyr276Cys)Pathogenic
Progressive myoclonic epilepsy type 3|not provided|KCTD7-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 276
NM_153033.5(KCTD7):c.550C>T (p.Arg184Cys)Pathogenic
Epilepsy, progressive myoclonic, 3, with intracellular inclusions|Progressive myoclonic epilepsy type 3|not provided|Neuronal ceroid lipofuscinosis|Inborn genetic diseases
β˜…β˜…β˜†β˜†2025β†’ Residue 184
NM_153033.5(KCTD7):c.520G>A (p.Ala174Thr)Likely pathogenic
Progressive myoclonic epilepsy type 3
β˜…β˜…β˜†β˜†2025β†’ Residue 174
NM_153033.5(KCTD7):c.145-2A>GLikely pathogenic
Inborn genetic diseases|Progressive myoclonic epilepsy type 3|Progressive myoclonic epilepsy
β˜…β˜…β˜†β˜†2024
NM_153033.5(KCTD7):c.295C>T (p.Arg99Ter)Pathogenic
Progressive myoclonic epilepsy type 3
β˜…β˜…β˜†β˜†2024β†’ Residue 99
NM_153033.5(KCTD7):c.835C>T (p.Arg279Cys)Likely pathogenic
Neuronal ceroid lipofuscinosis
β˜…β˜†β˜†β˜†2025β†’ Residue 279
NM_153033.5(KCTD7):c.338C>G (p.Ser113Ter)Pathogenic
Progressive myoclonic epilepsy type 3
β˜…β˜†β˜†β˜†2025β†’ Residue 113
NM_153033.5(KCTD7):c.130dup (p.Leu44fs)Pathogenic
Progressive myoclonic epilepsy type 3
β˜…β˜†β˜†β˜†2025β†’ Residue 44
NM_153033.5(KCTD7):c.139C>T (p.Gln47Ter)Pathogenic
Progressive myoclonic epilepsy type 3
β˜…β˜†β˜†β˜†2024β†’ Residue 47
NM_153033.5(KCTD7):c.367C>T (p.Arg123Ter)Pathogenic
Progressive myoclonic epilepsy type 3
β˜…β˜†β˜†β˜†2024β†’ Residue 123
NM_153033.5(KCTD7):c.514G>T (p.Glu172Ter)Pathogenic
Progressive myoclonic epilepsy type 3
β˜…β˜†β˜†β˜†2024β†’ Residue 172
NM_153033.5(KCTD7):c.835_840del (p.Arg279_Pro280del)Likely pathogenic
Progressive myoclonic epilepsy type 3
β˜…β˜†β˜†β˜†2024β†’ Residue 279
NM_153033.5(KCTD7):c.388C>T (p.Gln130Ter)Pathogenic
Progressive myoclonic epilepsy type 3
β˜…β˜†β˜†β˜†2023β†’ Residue 130
NM_153033.5(KCTD7):c.393C>G (p.Tyr131Ter)Likely pathogenic
Neuronal ceroid lipofuscinosis
β˜…β˜†β˜†β˜†2023β†’ Residue 131
NM_153033.5(KCTD7):c.294C>T (p.Asp98=)Likely pathogenic
Progressive myoclonic epilepsy type 3
β˜…β˜†β˜†β˜†2023β†’ Residue 98
NM_153033.5(KCTD7):c.604del (p.Tyr202fs)Likely pathogenic
Neuronal ceroid lipofuscinosis
β˜…β˜†β˜†β˜†2022β†’ Residue 202
NC_000007.13:g.(?_66098242)_(66098451_?)dupLikely pathogenic
Progressive myoclonic epilepsy type 3
β˜…β˜†β˜†β˜†2022
NM_153033.5(KCTD7):c.731del (p.Leu244fs)Likely pathogenic
Neuronal ceroid lipofuscinosis
β˜…β˜†β˜†β˜†2021β†’ Residue 244
View on ClinVar β†—
Related Genes
MFSD8Protein interaction95%RABGEF1Protein interaction87%PRICKLE1Protein interaction81%CLN3Protein interaction80%CLN5Protein interaction80%CLN8Protein interaction80%
Tissue Expression6 tissues
Ovary
100%
Brain
64%
Heart
59%
Bone Marrow
46%
Lung
32%
Liver
23%
Gene Interaction Network
Click a node to explore
KCTD7MFSD8RABGEF1PRICKLE1CLN3CLN5CLN8
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q96MP8
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.90LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.59 [0.39–0.90]
RankingsWhere KCTD7 stands among ~20K protein-coding genes
  • #9,748of 20,598
    Most Researched43
  • #1,625of 5,498
    Most Pathogenic Variants37
  • #8,169of 17,882
    Most Constrained (LOEUF)0.90
Genes detectedKCTD7
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genome sequence analyses identify novel risk loci for multiple system atrophy.
PMID: 38701790
Neuron Β· 2024
1.00
2
PMID: 39637217
0.90
3
A novel pathogenic variant in the KCTD7 gene in a patient with neuronal ceroid lipofuscinosis (CLN14): a case report and review of the literature.
PMID: 39350080
BMC Neurol Β· 2024
0.80
4
Progressive myoclonic epilepsy-associated gene Kctd7 regulates retinal neurovascular patterning and function.
PMID: 31175897
Neurochem Int Β· 2019
0.70
5
KCTD7-related progressive myoclonus epilepsy.
PMID: 27629772
Epileptic Disord Β· 2016
0.60