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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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KDM7A
lysine demethylase 7A
Chromosome 7 · 7q34
NCBI Gene: 80853Ensembl: ENSG00000006459.12HGNC: HGNC:22224UniProt: Q6ZMT4
27PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
histone H3K27me2/H3K27me3 demethylase activityhistone H3K9me/H3K9me2 demethylase activityzinc ion binding2-oxoglutarate-dependent dioxygenase activitycancerbreast carcinomaandrogenetic alopeciasmoking initiation
✦AI Summary

KDM7A is a Jumonji C domain-containing histone demethylase that catalyzes removal of mono- and di-methyl groups from multiple histone lysine residues 1. It specifically demethylates H3K9me2, H3K27me2, H3K36me2, and H4K20me1 23, with activity modulated by H3K4me3 binding, which suppresses H3K9me2 demethylation while enhancing H3K27me2 activity 2. KDM7A is essential for normal brain development and neuronal differentiation 1. Beyond developmental roles, KDM7A functions in disease-relevant processes. In breast cancer, KDM7A maintains cancer stem cell populations by upregulating stemness factors KLF4 and c-MYC while inhibiting apoptosis through BCL2 upregulation 4. In pancreatic cancer, G9a orchestrates KDM7A downregulation to promote H3K27 methylation and epithelial-mesenchymal transition 5. KDM7A also regulates cetuximab resistance in head and neck squamous cell carcinoma through nuclear miR-451a-mediated transcriptional activation 6. More broadly, KDM7A suppresses fibrotic macrophage polarization via H3K27me2-mediated repression of TLR8, with declining expression associated with age-related fibrosis susceptibility 7. Inhibition of KDM7A restores protective H3K79 methylation and prevents osteoarthritis progression 8. These findings establish KDM7A as a therapeutic target across multiple diseases.

Sources cited
1
KDM7A is a Jumonji C domain-containing histone demethylase that catalyzes removal of mono- and di-methyl groups from multiple histone lysine residues .
PMID: 37696455
2
It specifically demethylates H3K9me2, H3K27me2, H3K36me2, and H4K20me1 , , with activity modulated by H3K4me3 binding, which suppresses H3K9me2 demethylation while enhancing H3K27me2 activity .
PMID: 20023638
3
In breast cancer, KDM7A maintains cancer stem cell populations by upregulating stemness factors KLF4 and c-MYC while inhibiting apoptosis through BCL2 upregulation .
PMID: 31236965
4
In pancreatic cancer, G9a orchestrates KDM7A downregulation to promote H3K27 methylation and epithelial-mesenchymal transition .
PMID: 26688070
5
KDM7A also regulates cetuximab resistance in head and neck squamous cell carcinoma through nuclear miR-451a-mediated transcriptional activation .
PMID: 38943031
6
More broadly, KDM7A suppresses fibrotic macrophage polarization via H3K27me2-mediated repression of TLR8, with declining expression associated with age-related fibrosis susceptibility .
PMID: 41578150
7
Inhibition of KDM7A restores protective H3K79 methylation and prevents osteoarthritis progression .
PMID: 36927643
Disease Associationsⓘ20
cancerOpen Targets
0.56Moderate
breast carcinomaOpen Targets
0.38Weak
androgenetic alopeciaOpen Targets
0.37Weak
smoking initiationOpen Targets
0.33Weak
intracranial hemorrhageOpen Targets
0.33Weak
IrritabilityOpen Targets
0.32Weak
luminal A breast carcinomaOpen Targets
0.30Weak
Sensorineural hearing impairmentOpen Targets
0.30Weak
cervical carcinomaOpen Targets
0.29Weak
hypertensionOpen Targets
0.25Weak
pituitary gland diseaseOpen Targets
0.24Weak
Respiratory insufficiencyOpen Targets
0.24Weak
type 2 diabetes mellitusOpen Targets
0.11Weak
Tietze syndromeOpen Targets
0.10Weak
neoplasmOpen Targets
0.09Suggestive
breast cancerOpen Targets
0.09Suggestive
Abnormality of the gastrointestinal tractOpen Targets
0.08Suggestive
urinary bladder carcinomaOpen Targets
0.07Suggestive
Hepatic steatosisOpen Targets
0.07Suggestive
autosomal recessive spondylocostal dysostosisOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
H3C13Protein interaction98%H3C12Protein interaction96%KDM4AProtein interaction86%KDM6BProtein interaction86%KDM3AProtein interaction86%FBXL19Protein interaction77%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
56%
Liver
34%
Brain
32%
Heart
29%
Ovary
21%
Gene Interaction Network
Click a node to explore
KDM7AH3C13H3C12KDM4AKDM6BKDM3AFBXL19
PROTEIN STRUCTURE
Preparing viewer…
PDB3KV9 · 2.29 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.41Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.26 [0.17–0.41]
RankingsWhere KDM7A stands among ~20K protein-coding genes
  • #12,588of 20,598
    Most Researched27
  • #2,061of 17,882
    Most Constrained (LOEUF)0.41 · top quartile
Genes detectedKDM7A
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Inhibition of KDM7A/B histone demethylases restores H3K79 methylation and protects against osteoarthritis.
PMID: 36927643
Ann Rheum Dis · 2023
1.00
2
Lysine-specific demethylase 7A (KDM7A): A potential target for disease therapy.
PMID: 37696455
Biochem Pharmacol · 2023
0.90
3
Histone demethylase KDM7A negatively regulates fibrotic macrophage polarization and lung fibrosis progression.
PMID: 41578150
Commun Biol · 2026
0.80
4
Histone demethylase KDM7A is required for stem cell maintenance and apoptosis inhibition in breast cancer.
PMID: 31236965
J Cell Physiol · 2020
0.70
5
G9a orchestrates PCL3 and KDM7A to promote histone H3K27 methylation.
PMID: 26688070
Sci Rep · 2015
0.60