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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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KLRC1
killer cell lectin like receptor C1
Chromosome 12 · 12p13.2
NCBI Gene: 3821Ensembl: ENSG00000134545.14HGNC: HGNC:6374UniProt: P26715
112PubMed Papers
20Diseases
1Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub GeneReceptor
CLINICAL
Clinical Trials
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein antigen bindingprotein bindingnatural killer cell inhibitory signaling pathwayMHC class I protein complex bindingnon-small cell lung carcinomahead and neck squamous cell carcinomaneoplasmcancer
✦AI Summary

KLRC1 encodes NKG2A, an inhibitory C-type lectin receptor expressed on natural killer (NK) cells and CD8+ T cells that recognizes HLA-E, a non-classical MHC class I molecule 1. Upon engagement with HLA-E, KLRC1 mediates inhibitory signaling that suppresses cytotoxic function and promotes immune cell exhaustion 2. In SARS-CoV-2 infection, KLRC1 recognition of HLA-E complexed with viral peptides on lung epithelial cells dampens antiviral immune surveillance and contributes to NK cell and CD8+ T cell exhaustion 3. In cancer contexts, KLRC1 expression on CD8+ T cells correlates with exhaustion in multiple malignancies including gastric cancer, breast cancer, acral melanoma, and acute myeloid leukemia, and represents an alternative immune checkpoint axis independent of classical PD-1/PD-L1 pathways 2456. Clinically, KLRC1 disruption via CRISPR/Cas9 in CAR-NK cells enhances anti-tumor killing by overcoming HLA-E-mediated inhibition, demonstrating therapeutic potential 17. Additionally, tri-specific nano-antibodies targeting KLRC1 alongside PDL1 and 4-1BB effectively activate NK and T cell antitumor responses 8. These findings establish KLRC1 as a clinically relevant immune checkpoint warranting therapeutic targeting, particularly in HLA-E-expressing tumors.

Sources cited
1
KLRC1 encodes NKG2A; HLA-E-NKG2A interaction inhibits CAR-NK cells; CRISPR disruption of KLRC1 enhances antileukemic activity
PMID: 39349459
2
KLRC1/NKG2A expressed on exhausted CD8+ T cells in gastric cancer; HLA-E-KLRC1 interaction creates immunosuppressive microenvironment; anti-NKG2A therapy represents novel therapeutic opportunity
PMID: 35184420
3
KLRC1 expression increased on CD8+ T cells post-neoadjuvant chemotherapy in HR+ breast cancer; KLRC1 represents immune checkpoint with altered expression patterns
PMID: 38266804
4
KLRC1 (NKG2A) heterogeneously expressed on tumor-reactive CD8+ TILs in acral melanoma; associated with exhaustion phenotype
PMID: 39630887
5
NKG2A/KLRC1 defines alternative immune checkpoint in bladder cancer; associates with improved survival and PD-L1 blockade responsiveness; inhibited by HLA-E
PMID: 36099881
6
KLRC1 disruption via CRISPR-Cas9 in NK cells overcomes HLA-E-mediated inhibition against GD2+ melanoma cells
PMID: 39815622
7
Tri-specific nano-antibodies targeting NKG2A/KLRC1 alongside PDL1 and 4-1BB activate NK and CD8+ T cell antitumor responses
PMID: 39043643
8
KLRC1 receptor on exhausted T cells participates in cell-cell interactions with HLA class I molecules in severe Mycoplasma pneumoniae pneumonia
PMID: 39399649
Disease Associationsⓘ20
non-small cell lung carcinomaOpen Targets
0.30Weak
head and neck squamous cell carcinomaOpen Targets
0.27Weak
neoplasmOpen Targets
0.12Weak
cancerOpen Targets
0.11Weak
chronic hepatitis B virus infectionOpen Targets
0.09Suggestive
colorectal carcinomaOpen Targets
0.09Suggestive
chronic lymphocytic leukemiaOpen Targets
0.08Suggestive
infectionOpen Targets
0.08Suggestive
rheumatoid arthritisOpen Targets
0.08Suggestive
melanomaOpen Targets
0.08Suggestive
Posterior Leukoencephalopathy SyndromeOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.08Suggestive
lung cancerOpen Targets
0.08Suggestive
ulcerative colitisOpen Targets
0.07Suggestive
nonpapillary renal cell carcinomaOpen Targets
0.07Suggestive
colitisOpen Targets
0.07Suggestive
influenzaOpen Targets
0.07Suggestive
COVID-19Open Targets
0.07Suggestive
acute myeloid leukemiaOpen Targets
0.07Suggestive
psoriasisOpen Targets
0.06Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Drug Targets1
MONALIZUMABPhase III
NKG2-A/NKG2-B type II integral membrane protein inhibitor
head and neck squamous cell carcinoma
Related Genes
CD8AProtein interaction100%MICBProtein interaction100%CD96Protein interaction100%TYROBPProtein interaction100%RPL5Protein interaction100%IFNGProtein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Lung
44%
Liver
22%
Ovary
4%
Brain
4%
Heart
0%
Gene Interaction Network
Click a node to explore
KLRC1CD8AMICBCD96TYROBPRPL5IFNG
PROTEIN STRUCTURE
Preparing viewer…
PDB3BDW · 2.50 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.24LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.78 [0.51–1.24]
RankingsWhere KLRC1 stands among ~20K protein-coding genes
  • #4,234of 20,598
    Most Researched112 · top quartile
  • #13,019of 17,882
    Most Constrained (LOEUF)1.24
Genes detectedKLRC1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Revealing the transcriptional heterogeneity of organ-specific metastasis in human gastric cancer using single-cell RNA Sequencing.
PMID: 35184420
Clin Transl Med · 2022
1.00
2
CRISPR/Cas9 editing of NKG2A improves the efficacy of primary CD33-directed chimeric antigen receptor natural killer cells.
PMID: 39349459
Nat Commun · 2024
0.90
3
Neoadjuvant chemotherapy-induced remodeling of human hormonal receptor-positive breast cancer revealed by single-cell RNA sequencing.
PMID: 38266804
Cancer Lett · 2024
0.80
4
Orchestrating NK and T cells via tri-specific nano-antibodies for synergistic antitumor immunity.
PMID: 39043643
Nat Commun · 2024
0.70
5
Single-cell profiling of acral melanoma infiltrating lymphocytes reveals a suppressive tumor microenvironment.
PMID: 39630887
Sci Transl Med · 2024
0.60