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3 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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KRTAP3-3
keratin associated protein 3-3
Chromosome 17 · 17q21.2
NCBI Gene: 85293Ensembl: ENSG00000212899.3HGNC: HGNC:18890UniProt: Q9BYR6
10PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingcytosolstructural molecule activitykeratin filament
✦AI Summary

KRTAP3-3 (keratin-associated protein 3-3) is a structural protein essential for hair shaft formation. In the hair cortex, KRTAP3-3 functions as part of the interfilamentous matrix surrounding hair keratin intermediate filaments, contributing to hair rigidity and resistance through extensive disulfide bond cross-linking with cysteine-rich hair keratins [UniProt annotation]. The protein exhibits protein binding activity and localizes to the cytosol. Genomically, KRTAP3-3 shares regulatory elements with related family members KRTAP3-1 and KRTAP3-5 in skin tissue, suggesting coordinated expression patterns 1. Beyond its primary hair structural role, recent genetic studies have identified KRTAP3-3 as associated with chr17 (circadian preference) in a large-scale exome-wide association study of 450,000 UK Biobank participants, with findings validated in the FinnGen cohort 2. Clinically, KRTAP3-3 has emerged as a potential biomarker in head and neck squamous cell carcinoma (HNSCC), identified through machine learning analysis as a gene with significant differential expression in cancer tissues and prognostic value 3. These findings suggest KRTAP3-3 may have roles extending beyond hair biology, though the mechanistic basis for its association with sleep-wake timing and cancer biology remains to be elucidated.

Sources cited
1
KRTAP3-3 shares regulatory elements with KRTAP3-1 and KRTAP3-5 in skin and pancreas tissues, indicating coordinated gene expression
PMID: 37976327
2
KRTAP3-3 is associated with chronotype in exome-wide association study of 450,000 participants, confirmed in FinnGen cohort
PMID: 38177695
3
KRTAP3-3 is identified as a prognostic biomarker in head and neck squamous cell carcinoma with differential expression in cancer tissues
PMID: 41028529
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
KRT83Protein interaction71%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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KRTAP3-3KRT83
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9BYR6
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.93LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.49 [0.88–1.93]
RankingsWhere KRTAP3-3 stands among ~20K protein-coding genes
  • #17,087of 20,598
    Most Researched10
  • #17,473of 17,882
    Most Constrained (LOEUF)1.93
Genes detectedKRTAP3-3
Sources retrieved3 papers
Response time—
📄 Sources
3
1
Exome sequencing identifies genes associated with sleep-related traits.
PMID: 38177695
Nat Hum Behav · 2024
1.00
2
Gene communities in co-expression networks across different tissues.
PMID: 37976327
PLoS Comput Biol · 2023
0.67
3
Bioinformatics and machine learning reveal novel prognostic biomarkers in head and neck squamous cell carcinoma.
PMID: 41028529
J Appl Genet · 2025
0.33