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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
LDB3
LIM domain binding 3
Chromosome 10 Β· 10q23.2
NCBI Gene: 11155Ensembl: ENSG00000122367.21HGNC: HGNC:15710UniProt: A0A0S2Z501
49PubMed Papers
25Diseases
0Drugs
38Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
cytoskeletonprotein bindingcytoskeletal protein bindingZ dischypertrophic cardiomyopathymyofibrillar myopathy 4Late-onset distal myopathy, Markesbery-Griggs typeleft ventricular noncompaction
✦AI Summary

LDB3 (LIM domain binding 3) is a cytoskeletal adapter protein primarily localized to the Z-disk of striated muscle that couples protein kinase C signaling to the cytoskeleton through its LIM domains [UniProt]. The protein interacts with key sarcomeric components including muscle Ξ±-actinin and actin, regulating actin cytoskeleton organization and muscle structure development [GO Annotations]. LDB3 mutations cause multiple forms of inherited muscle disease. It is associated with myofibrillar myopathy, characterized by Z-disk disintegration and myofibrillar dissolution 1, and has been identified among approximately 20 genes causing autosomal dominant distal myopathy, a progressive primary muscle disorder with prominent distal weakness 2. LDB3 variants also cause familial dilated cardiomyopathy with or without left ventricular non-compaction (LVNC), a genetically heterogeneous condition where sarcomeric gene mutations correlate with disease severity 3. Beyond skeletal muscle disease, recent evidence indicates LDB3 plays a broader role in cardiovascular health. LDB3 was identified as a hub gene in Stanford type A aortic dissection, a life-threatening vascular condition, with LDB3 predominantly expressed in vascular smooth muscle cells 4. Disease-associated LDB3 single nucleotide polymorphisms in the UK Biobank associated with aortic aneurysm and dissection, and LDB3 expression was reduced in diseased aortic tissues, suggesting its importance in maintaining vascular structural integrity.

Sources cited
1
LDB3 is one of approximately 20 genes associated with autosomal dominant distal myopathy
PMID: 33458580
2
Myofibrillar myopathies are characterized by Z-disk disintegration and myofibrillar dissolution; LDB3 mutations cause this pathology
PMID: 21256014
3
Sarcomeric gene mutations in LVNC patients correlate with disease severity markers including myocardial characteristics
PMID: 28798025
4
LDB3 is a hub gene in Stanford type A aortic dissection, predominantly expressed in smooth muscle cells, with disease-associated SNPs and reduced expression in diseased tissues
PMID: 40099963
⚠Limited data available β€” This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsβ“˜25
hypertrophic cardiomyopathyOpen Targets
0.79Strong
myofibrillar myopathy 4Open Targets
0.77Strong
Late-onset distal myopathy, Markesbery-Griggs typeOpen Targets
0.69Moderate
left ventricular noncompactionOpen Targets
0.65Moderate
atrial fibrillationOpen Targets
0.49Moderate
Rare familial disorder with hypertrophic cardiomyopathyOpen Targets
0.45Moderate
dilated cardiomyopathyOpen Targets
0.43Moderate
myofibrillar myopathyOpen Targets
0.42Moderate
Abnormality of the cardiovascular systemOpen Targets
0.42Moderate
familial isolated dilated cardiomyopathyOpen Targets
0.40Moderate
cardiomyopathyOpen Targets
0.38Weak
cardiomyopathy, dilated, 2lOpen Targets
0.37Weak
familial isolated arrhythmogenic ventricular dysplasia, biventricular formOpen Targets
0.37Weak
familial isolated arrhythmogenic ventricular dysplasia, left dominant formOpen Targets
0.37Weak
familial isolated arrhythmogenic ventricular dysplasia, right dominant formOpen Targets
0.37Weak
neuromuscular diseaseOpen Targets
0.34Weak
familial hypertrophic cardiomyopathyOpen Targets
0.33Weak
synovium disorderOpen Targets
0.32Weak
neurodegenerative diseaseOpen Targets
0.30Weak
hypertensionOpen Targets
0.29Weak
Cardiomyopathy, dilated, 1C, with or without left ventricular non-compactionUniProt
Cardiomyopathy, dilated, 2LUniProt
Cardiomyopathy, familial hypertrophic, 24UniProt
Left ventricular non-compaction 3UniProt
Myopathy, myofibrillar, 4UniProt
Pathogenic Variants38
NM_001368067.1(LDB3):c.439G>A (p.Ala147Thr)Pathogenic
Myofibrillar myopathy 4|not provided|Cardiomyopathy|Myofibrillar myopathy 4;Dilated cardiomyopathy 1C
β˜…β˜…β˜†β˜†2026β†’ Residue 147
NM_001368067.1(LDB3):c.494C>T (p.Ala165Val)Pathogenic
Myofibrillar myopathy 4|Neuromuscular disease|Myofibrillar myopathy|not provided|Cardiomyopathy|Dilated cardiomyopathy 1C|LDB3-related disorder|Cardiovascular phenotype
β˜…β˜…β˜†β˜†2025β†’ Residue 165
NM_007078.3(LDB3):c.838C>T (p.Gln280Ter)Pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2026β†’ Residue 280
NM_007078.3(LDB3):c.1086-247_1231+2delPathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2026
NM_007078.3(LDB3):c.726del (p.Ser243fs)Pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2025β†’ Residue 243
NM_007078.3(LDB3):c.689+1G>ALikely pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2025
NM_007078.3(LDB3):c.529del (p.Ala177fs)Pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2025β†’ Residue 177
NM_007078.3(LDB3):c.59del (p.Gly20fs)Pathogenic
not provided|Cardiomyopathy, dilated, 2l|Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2025β†’ Residue 20
NM_007078.3(LDB3):c.1675del (p.Arg559fs)Pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2025β†’ Residue 559
NM_007078.3(LDB3):c.567_571dup (p.Gln191fs)Pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2025β†’ Residue 191
NM_007078.3(LDB3):c.860-1G>ALikely pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2025
NM_007078.3(LDB3):c.566C>A (p.Ser189Ter)Pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2024β†’ Residue 189
NM_007078.3(LDB3):c.948_957del (p.Ala319fs)Likely pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2024β†’ Residue 319
NM_007078.3(LDB3):c.16dup (p.Thr6fs)Pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2024β†’ Residue 6
NM_007078.3(LDB3):c.859del (p.Met287fs)Pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2024β†’ Residue 287
NM_007078.3(LDB3):c.392del (p.Gly131fs)Pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2024β†’ Residue 131
NM_007078.3(LDB3):c.245+1G>ALikely pathogenic
Myofibrillar myopathy 4|Thyroid cancer, nonmedullary, 1
β˜…β˜†β˜†β˜†2024
NM_007078.3(LDB3):c.690-2A>GLikely pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2024
NM_007078.3(LDB3):c.1457dup (p.Ser486fs)Pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2024β†’ Residue 486
NM_007078.3(LDB3):c.1439dup (p.Ala482fs)Pathogenic
Myofibrillar myopathy 4
β˜…β˜†β˜†β˜†2024β†’ Residue 482
View on ClinVar β†—
Related Genes
PRICKLE4Shared pathway100%TNNI3Protein interaction99%MYOZ1Protein interaction99%CRYABProtein interaction97%MYOZ2Protein interaction93%MYOZ3Protein interaction88%
Tissue Expression6 tissues
Heart
100%
Brain
2%
Lung
1%
Ovary
0%
Liver
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
LDB3PRICKLE4TNNI3MYOZ1CRYABMYOZ2MYOZ3
PROTEIN STRUCTURE
Preparing viewer…
PDB4YDP Β· 1.40 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.86LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.68 [0.54–0.86]
RankingsWhere LDB3 stands among ~20K protein-coding genes
  • #8,970of 20,598
    Most Researched49
  • #1,600of 5,498
    Most Pathogenic Variants38
  • #7,586of 17,882
    Most Constrained (LOEUF)0.86
Genes detectedLDB3
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Panorama of the distal myopathies.
PMID: 33458580
Acta Myol Β· 2020
1.00
2
PMID: 20301486
0.90
3
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
0.80
4
RBM20, a gene for hereditary cardiomyopathy, regulates titin splicing.
PMID: 22466703
Nat Med Β· 2012
0.70
5
Novel Genetic Triggers and Genotype-Phenotype Correlations in Patients With Left Ventricular Noncompaction.
PMID: 28798025
Circ Cardiovasc Genet Β· 2017
0.60