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3 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LIAT1
ligand of ATE1
Chromosome 17 · 17p13.3
NCBI Gene: 400566Ensembl: ENSG00000187624.9HGNC: HGNC:33800UniProt: A0A0H4IV28
9PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
molecular condensate scaffold activityprotein arginylationmembraneless organelle assemblynucleolus
✦AI Summary

LIAT1 (ligand of ATE1) is a regulatory protein that functions as a cofactor in the N-end rule protein degradation pathway and participates in nucleolar organization. Mechanistically, LIAT1 interacts with arginyl-tRNA protein transferase 1 (ATE1) to stimulate N-terminal arginylation of protein substrates 1, a post-translational modification that targets proteins for proteasomal degradation. Additionally, LIAT1 functions as an RNA-binding protein capable of binding arginyl-tRNA, suggesting roles in coordinating protein and tRNA metabolism 2. LIAT1's N-terminal intrinsically disordered region (IDR) mediates liquid-liquid phase separation (LLPS) in the nucleolus, where it forms dynamic membraneless condensates 3. This nucleolar targeting is regulated by the lysyl-hydroxylase Jmjd6, which modifies LIAT1 through its poly-K region to inhibit nucleolar localization 3. Disease relevance extends to neurodegenerative diseases, as LIAT1-mediated ATE1 signaling regulates TDP-43 proteostasis, with TDP-43 dysfunction implicated in ALS and frontotemporal dementia 2. The evolutionary conservation of LIAT1 across vertebrates and primates, including variable 10-residue tandem repeats in primate lineages, suggests conserved physiological importance 1.

Sources cited
1
LIAT1 interacts with ATE1, stimulates in vitro N-terminal arginylation activity, and contains a conserved ~30-residue region required for ATE1 binding
PMID: 25369936
2
LIAT1 has an N-terminal intrinsically disordered region that mediates nucleolar LLPS, contains a poly-K region for nucleolar targeting, and is regulated by Jmjd6-mediated modification
PMID: 33443146
3
LIAT1 is an RNA-binding protein that interacts with tRNA Arg and functions in the ATE1-mediated arginylation pathway regulating TDP-43 proteostasis
PMID: 39081859
⚠Limited data available — This gene has 3 indexed publications. Summary and analysis may be incomplete.
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ENO2Protein interaction94%SYPProtein interaction93%KRT19Protein interaction88%NCAM1Protein interaction83%KRT18Protein interaction80%NAPSAProtein interaction79%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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LIAT1ENO2SYPKRT19NCAM1KRT18NAPSA
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q6ZQX7
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.98LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF2.29 [1.20–1.98]
RankingsWhere LIAT1 stands among ~20K protein-coding genes
  • #17,363of 20,598
    Most Researched9
  • #17,807of 17,882
    Most Constrained (LOEUF)1.98
Genes detectedLIAT1
Sources retrieved3 papers
Response time—
📄 Sources
3
1
tRNA
PMID: 39081859
MicroPubl Biol · 2024
1.00
2
Liat1, an arginyltransferase-binding protein whose evolution among primates involved changes in the numbers of its 10-residue repeats.
PMID: 25369936
Proc Natl Acad Sci U S A · 2014
0.67
3
The Ligand of Ate1 is intrinsically disordered and participates in nucleolar phase separation regulated by Jumonji Domain Containing 6.
PMID: 33443146
Proc Natl Acad Sci U S A · 2021
0.33