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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LILRA4
leukocyte immunoglobulin like receptor A4
Chromosome 19 · 19q13.42
NCBI Gene: 23547Ensembl: ENSG00000239961.3HGNC: HGNC:15503UniProt: P59901
21PubMed Papers
20Diseases
1Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Receptor
CLINICAL
Clinical Trials
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
signaling receptor bindingprotein bindingcoreceptor activitynegative regulation of toll-like receptor 7 signaling pathwaysystemic lupus erythematosusdiscoid lupus erythematosuslupus nephritisalopecia areata
✦AI Summary

LILRA4 is a leukocyte immunoglobulin-like receptor that functions as a coreceptor to negatively regulate innate immune responses, primarily in plasmacytoid dendritic cells (pDCs). 12 It signals through association with FCER1G to activate Src family and Syk kinases, triggering intracellular calcium mobilization. 12 LILRA4 acts as a negative regulator of TLR7 and TLR9 signaling cascades, downregulating type I interferon (IFNA1, IFNA2, IFNA4, IFNB1) and TNF production in response to viral infections and CpG dinucleotides. 123 It also suppresses interferon production when HIV-1-infected cells express BST2. 4 Notably, LILRA4 preserves pDC differentiation into antigen-presenting cells despite its inhibitory function. 3 Clinically, genetic variants in LILRA4 show protective associations with autoimmune conditions: a variant near LILRA4/LILRA5 was suggestively associated with reduced autoimmune hepatitis risk (rs11084330, OR=0.65), 5 and LILRA4 was identified as a core gene for rheumatoid arthritis through genome-wide trans effects analysis, supported by Mendelian randomization. 6 These findings highlight LILRA4's role as an immune checkpoint regulator with therapeutic potential in autoimmune diseases.

Sources cited
1
LILRA4 signals through FCER1G to activate Src and Syk kinases and mobilize intracellular calcium; negative regulates TLR7/TLR9 signaling in pDCs
PMID: 16735691
2
LILRA4 downregulates type I interferons and TNF production in pDCs exposed to influenza or CpG via FCER1G signaling
PMID: 19564354
3
LILRA4 negatively regulates TLR7/TLR9-mediated interferon production without interfering with pDC differentiation
PMID: 24586760
4
LILRA4 downregulates interferon production in response to BST2 on HIV-1 infected cells
PMID: 26172439
5
LILRA4/LILRA5 variant (rs11084330) shows protective association with autoimmune hepatitis type 1 (OR=0.65)
PMID: 35184318
6
LILRA4 identified as core gene for rheumatoid arthritis through genome-wide aggregated trans effects analysis, supported by Mendelian randomization
PMID: 39887658
7
LILRA4 is a pDC-exclusive marker useful for quantifying plasmacytoid dendritic cells in gene expression studies
PMID: 30395816
Disease Associationsⓘ20
systemic lupus erythematosusOpen Targets
0.10Weak
alopecia areataOpen Targets
0.09Suggestive
discoid lupus erythematosusOpen Targets
0.09Suggestive
lupus nephritisOpen Targets
0.09Suggestive
disease of peritoneumOpen Targets
0.09Suggestive
Abnormality of the gastrointestinal tractOpen Targets
0.08Suggestive
acquired idiopathic inflammatory myopathyOpen Targets
0.07Suggestive
dermatomyositisOpen Targets
0.07Suggestive
Chronic mucocutaneous candidosisOpen Targets
0.06Suggestive
isolated agammaglobulinemiaOpen Targets
0.05Suggestive
classic Hodgkin lymphomaOpen Targets
0.05Suggestive
Hodgkins lymphomaOpen Targets
0.05Suggestive
severe combined immunodeficiency due to CARD11 deficiencyOpen Targets
0.05Suggestive
combined immunodeficiency due to CTPS1 deficiencyOpen Targets
0.05Suggestive
combined immunodeficiency with skin granulomasOpen Targets
0.05Suggestive
reticular dysgenesisOpen Targets
0.05Suggestive
immunodeficiency 18Open Targets
0.05Suggestive
BENTA diseaseOpen Targets
0.05Suggestive
agammaglobulinemia 8, autosomal dominantOpen Targets
0.04Suggestive
macroglobulinemia, Waldenstrom, 1Open Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Drug Targets1
DAXDILIMABPhase II
Leukocyte immunoglobulin-like receptor subfamily A member 4 inhibitor
alopecia areata
Related Genes
BST2Protein interaction100%CD247Protein interaction99%FCGR3AProtein interaction99%CD300CProtein interaction99%SYKProtein interaction96%CLEC4CProtein interaction91%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
24%
Lung
4%
Liver
1%
Ovary
0%
Heart
0%
Gene Interaction Network
Click a node to explore
LILRA4BST2CD247FCGR3ACD300CSYKCLEC4C
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt P59901
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.28LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.02 [0.81–1.28]
RankingsWhere LILRA4 stands among ~20K protein-coding genes
  • #13,944of 20,598
    Most Researched21
  • #13,491of 17,882
    Most Constrained (LOEUF)1.28
Genes detectedLILRA4
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Genome-wide meta-analysis identifies susceptibility loci for autoimmune hepatitis type 1.
PMID: 35184318
Hepatology · 2022
1.00
2
Application of a risk score model based on glycosylation-related genes in the prognosis and treatment of patients with low-grade glioma.
PMID: 39445005
Front Immunol · 2024
0.90
3
Genome-Wide Aggregated Trans Effects Analysis Identifies Genes Encoding Immune Checkpoints as Core Genes for Rheumatoid Arthritis.
PMID: 39887658
Arthritis Rheumatol · 2025
0.80
4
PMID: 40260241
Front Immunol · 2025
0.70
5
Immunogenetic Studies in Patients With GAD-Positive Stiff-Person Syndrome Reveal Novel Lymphocytic Genes and
PMID: 39933127
Neurol Neuroimmunol Neuroinflamm · 2025
0.60