HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
LNPK
lunapark, ER junction formation factor
Chromosome 2 Β· 2q31.1
NCBI Gene: 80856Ensembl: ENSG00000144320.15HGNC: HGNC:21610UniProt: B7Z829
65PubMed Papers
21Diseases
0Drugs
8Pathogenic Variants
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingidentical protein bindingendoplasmic reticulum organizationendoplasmic reticulum tubular network maintenanceneurodevelopmental disorder with epilepsy and hypoplasia of the corpus callosumcarpal tunnel syndromeJaundicemultinodular goiter
✦AI Summary

LNPK (lunapark) is an endoplasmic reticulum (ER)-shaping membrane protein that stabilizes nascent three-way junctions within the ER tubular network 1. As a curvature-stabilizing protein, LNPK localizes to and maintains ER three-way junctions by antagonizing the small GTPase Atlastin 2. The protein possesses intrinsic ubiquitin ligase activity in its N-terminal region, which is required for proper ER junction localization 2. Beyond ER morphology, LNPK functions in sequestering misassembled nucleoporins at ER foci to maintain nuclear pore complex function 3. Clinically, biallelic loss-of-function LNPK variants cause autosomal recessive neurodevelopmental disorder with epilepsy and corpus callosum hypoplasia 41. Affected individuals present with moderate-to-profound developmental delay, cognitive impairment, refractory epilepsy, and progressive neurodegeneration with characteristic 'ear-of-the-lynx' sign on brain imagingβ€”signal alterations of the forceps minor 4. Additional features include cerebellar hypoplasia/atrophy and substantia nigra signal changes 45. During neurodevelopment, LNPK is critical for interneuron migration; LNPK deletion impairs ER displacement along the leading neuronal branch, resulting in abnormal migration 6. The disease mechanism likely involves ER-phagy dysfunction related to perturbed ER morphology.

Sources cited
1
LNPK is an ER-shaping protein that stabilizes three-way junctions; mutations cause neurodevelopmental syndrome with epilepsy and corpus callosum hypoplasia
PMID: 30032983
2
LNPK localizes to ER three-way junctions and possesses intrinsic ubiquitin ligase activity required for junction localization
PMID: 27387505
3
LNPK is required for sequestering misassembled nucleoporins at ER foci to maintain nuclear pore complex function
PMID: 40079246
4
LNPK deficiency causes autosomal recessive neurodevelopmental disorder with developmental delay, refractory epilepsy, corpus callosum hypoplasia, and characteristic 'ear-of-the-lynx' sign
PMID: 37794925
5
LNPK variants present with progressive cerebral atrophy and neurodegeneration
PMID: 35599435
6
LNPK is critical for interneuron migration during development; its deletion impairs ER displacement and results in abnormal migration
PMID: 37758944
Disease Associationsβ“˜21
neurodevelopmental disorder with epilepsy and hypoplasia of the corpus callosumOpen Targets
0.73Strong
carpal tunnel syndromeOpen Targets
0.32Weak
JaundiceOpen Targets
0.24Weak
multinodular goiterOpen Targets
0.23Weak
ArthropathyOpen Targets
0.20Weak
Neurodevelopmental disorderOpen Targets
0.19Weak
Global developmental delayOpen Targets
0.19Weak
Intellectual disabilityOpen Targets
0.19Weak
deficiency anemiaOpen Targets
0.18Weak
Abnormal cerebellum morphologyOpen Targets
0.18Weak
Generalized hypotoniaOpen Targets
0.18Weak
Hypoplasia of the corpus callosumOpen Targets
0.18Weak
SeizureOpen Targets
0.18Weak
Abnormality of the skeletal systemOpen Targets
0.16Weak
genetic disorderOpen Targets
0.15Weak
Abruptio PlacentaeOpen Targets
0.13Weak
biliary tract diseaseOpen Targets
0.12Weak
Subdural hemorrhageOpen Targets
0.12Weak
cervical cancerOpen Targets
0.12Weak
Blount diseaseOpen Targets
0.09Suggestive
Neurodevelopmental disorder with epilepsy and hypoplasia of the corpus callosumUniProt
Pathogenic Variants8
NM_030650.3(LNPK):c.623del (p.Pro208fs)Pathogenic
not provided|Neurodevelopmental disorder with epilepsy and hypoplasia of the corpus callosum
β˜…β˜…β˜†β˜†2026β†’ Residue 208
NM_030650.3(LNPK):c.889C>T (p.Arg297Ter)Pathogenic
Neurodevelopmental disorder with epilepsy and hypoplasia of the corpus callosum
β˜…β˜†β˜†β˜†2024β†’ Residue 297
NM_030650.3(LNPK):c.402_405del (p.Leu134fs)Likely pathogenic
Neurodevelopmental disorder with epilepsy and hypoplasia of the corpus callosum
β˜…β˜†β˜†β˜†2023β†’ Residue 134
NM_030650.3(LNPK):c.901dup (p.Cys301fs)Likely pathogenic
Neurodevelopmental disorder with epilepsy and hypoplasia of the corpus callosum
β˜…β˜†β˜†β˜†2022β†’ Residue 301
NM_030650.3(LNPK):c.1054+1G>CPathogenic
Neurodevelopmental disorder with epilepsy and hypoplasia of the corpus callosum
β˜…β˜†β˜†β˜†2020
NM_030650.3(LNPK):c.361G>T (p.Glu121Ter)Likely pathogenic
Neurodevelopmental disorder with epilepsy and hypoplasia of the corpus callosum
β˜…β˜†β˜†β˜†β†’ Residue 121
NM_030650.3(LNPK):c.751C>T (p.Arg251Ter)Pathogenic
Neurodevelopmental disorder with epilepsy and hypoplasia of the corpus callosum
β˜†β˜†β˜†β˜†2018β†’ Residue 251
NM_030650.3(LNPK):c.726del (p.Pro243fs)Pathogenic
Neurodevelopmental disorder with epilepsy and hypoplasia of the corpus callosum
β˜†β˜†β˜†β˜†2018β†’ Residue 243
View on ClinVar β†—
Related Genes
MTX2Protein interaction95%EVX2Protein interaction84%HOXD1Protein interaction83%REEP2Shared pathway33%REEP6Shared pathway25%REEP1Shared pathway25%
Tissue Expression6 tissues
Brain
100%
Bone Marrow
80%
Heart
52%
Liver
47%
Ovary
36%
Lung
35%
Gene Interaction Network
Click a node to explore
LNPKMTX2EVX2HOXD1REEP2REEP6REEP1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9C0E8
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.96LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.61 [0.39–0.96]
RankingsWhere LNPK stands among ~20K protein-coding genes
  • #7,181of 20,598
    Most Researched65
  • #3,074of 5,498
    Most Pathogenic Variants8
  • #9,113of 17,882
    Most Constrained (LOEUF)0.96
Genes detectedLNPK
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Assembloid CRISPR screens reveal impact of disease genes in human neurodevelopment.
PMID: 37758944
Nature Β· 2023
1.00
2
Expanding the Autosomal Recessive Gene Spectrum of Parkinson's Disease: A Study within the CPD10KGP.
PMID: 40959972
Mov Disord Β· 2025
0.90
3
Replication of gene polymorphisms associated with periodontitis-related traits in an elderly cohort: the Washington Heights/Inwood Community Aging Project Ancillary Study of Oral Health.
PMID: 35179257
J Clin Periodontol Β· 2022
0.80
4
An ER-associated structure sequesters misassembled FG-rich nucleoporins to help maintain nuclear pore complex function.
PMID: 40079246
J Cell Sci Β· 2025
0.70
5
Lunapark deficiency leads to an autosomal recessive neurodevelopmental phenotype with a degenerative course, epilepsy and distinct brain anomalies.
PMID: 37794925
Brain Commun Β· 2023
0.60