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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LRCH1
leucine rich repeats and calponin homology domain containing 1
Chromosome 13 · 13q14.13-q14.2
NCBI Gene: 23143Ensembl: ENSG00000136141.15HGNC: HGNC:20309UniProt: Q9Y2L9
59PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingnegative regulation of GTPase activitycellular response to chemokinenegative regulation of T cell migrationneurodegenerative diseaseatrial fibrillationstrokeAbruptio Placentae
✦AI Summary

LRCH1 (leucine-rich repeats and calponin homology domain containing 1) functions as a negative regulator of immune cell migration and cytotoxicity through multiple molecular mechanisms. LRCH1 directly binds the linker for activation of T cells (LAT) and reduces its phosphorylation and interaction with GRB2, thereby suppressing T cell receptor signaling 1. Additionally, LRCH1 competes with Cdc42 for interaction with guanine-nucleotide exchange factor DOCK8, preventing PKCα-induced DOCK8 activation and CD4+ T cell migration in response to chemokine stimulation 2. LRCH1 similarly inhibits NK cell cytotoxicity by attenuating Src kinase signaling 3. Clinically, LRCH1 loss-of-function enhances protective immunity: Lrch1-deficient mice show improved CD8+ T cell responses to influenza and Listeria, with enhanced tumor clearance in B16 melanoma models 1. LRCH1 knockout in CAR T cells targeting glypican-3 improves migration and proliferation, suggesting therapeutic potential 1. Conversely, LRCH1 expression inversely correlates with ulcerative colitis disease activity, and upregulation suppresses pathogenic CD4+ T cell migration 4. LRCH1 also negatively regulates post-traumatic spinal cord injury neuroinflammation by suppressing microglial pro-inflammatory cytokine production 5. Genetic variants in LRCH1 are associated with delayed encephalopathy after carbon monoxide poisoning 6 and shared cardiovascular-cerebrovascular disease susceptibility 7.

Sources cited
1
LRCH1 directly binds LAT and reduces its phosphorylation; LRCH1 deficiency enhances CD8+ T cell proliferation, cytotoxicity, and tumor clearance; CAR T cell improvement with LRCH1 knockout
PMID: 32727906
2
LRCH1 competes with Cdc42 for DOCK8 interaction; restrains chemokine-induced CD4+ T cell migration; protective from EAE when overexpressed
PMID: 28028151
3
LRCH1 is a negative regulator of NK-92 cell cytotoxicity through attenuation of Src signaling
PMID: 32173150
4
LRCH1 expression is decreased in ulcerative colitis; negatively correlates with disease activity; inhibits CD4+ T cell migration toward CXCL12
PMID: 32210709
5
LRCH1 knockdown increases microglial pro-inflammatory cytokine production and exacerbates post-spinal cord injury neuroinflammation
PMID: 32631435
6
LRCH1 polymorphisms associated with delayed encephalopathy after acute carbon monoxide poisoning
PMID: 31842790
7
LRCH1 is a colocalized pleiotropic locus for cardiovascular and cerebrovascular diseases; methylation may play causal role in genetic pleiotropy
PMID: 39730871
8
No significant association between LRCH1 SNP rs912428 and knee osteoarthritis susceptibility
PMID: 18049793
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.46Moderate
atrial fibrillationOpen Targets
0.41Moderate
strokeOpen Targets
0.39Weak
Abruptio PlacentaeOpen Targets
0.31Weak
migraine disorderOpen Targets
0.31Weak
HeadacheOpen Targets
0.31Weak
peripheral arterial diseaseOpen Targets
0.31Weak
coronary artery diseaseOpen Targets
0.30Weak
adolescent idiopathic scoliosisOpen Targets
0.30Weak
occlusion precerebral arteryOpen Targets
0.30Weak
PainOpen Targets
0.30Weak
Ischemic strokeOpen Targets
0.30Weak
cerebrovascular disorderOpen Targets
0.30Weak
rheumatoid arthritisOpen Targets
0.27Weak
Benign Thyroid Gland NeoplasmOpen Targets
0.26Weak
placenta praeviaOpen Targets
0.26Weak
diabetic ketoacidosisOpen Targets
0.24Weak
gram-positive bacterial infectionsOpen Targets
0.24Weak
cardiomyopathyOpen Targets
0.22Weak
ulcerative colitisOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LRCH3Protein interaction98%DOCK7Protein interaction84%DOCK6Protein interaction77%LRCH4Protein interaction76%NME8Protein interaction75%DOCK8Protein interaction60%
Tissue Expression6 tissues
Lung
100%
Heart
88%
Bone Marrow
83%
Ovary
60%
Liver
49%
Brain
28%
Gene Interaction Network
Click a node to explore
LRCH1LRCH3DOCK7DOCK6LRCH4NME8DOCK8
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9Y2L9
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.48Moderately Constrained
pLIⓘ
0.99Intolerant
Observed/Expected LoF0.32 [0.22–0.48]
RankingsWhere LRCH1 stands among ~20K protein-coding genes
  • #7,786of 20,598
    Most Researched59
  • #2,780of 17,882
    Most Constrained (LOEUF)0.48 · top quartile
Genes detectedLRCH1
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
LRCH1 deficiency enhances LAT signalosome formation and CD8
PMID: 32727906
Proc Natl Acad Sci U S A · 2020
1.00
2
Lack of association of single nucleotide polymorphism in LRCH1 with knee osteoarthritis susceptibility.
PMID: 18049793
J Hum Genet · 2008
0.90
3
Identification of shared genetic etiology of cardiovascular and cerebrovascular diseases through common cardiometabolic risk factors.
PMID: 39730871
Commun Biol · 2024
0.80
4
LRCH1 interferes with DOCK8-Cdc42-induced T cell migration and ameliorates experimental autoimmune encephalomyelitis.
PMID: 28028151
J Exp Med · 2017
0.70
5
Leucine rich repeats and calponin homology domain containing 1 inhibits NK-92 cell cytotoxicity through attenuating Src signaling.
PMID: 32173150
Immunobiology · 2020
0.60