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5 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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LRRIQ3
leucine rich repeats and IQ motif containing 3
Chromosome 1 · 1p31.1
NCBI Gene: 127255Ensembl: ENSG00000162620.16HGNC: HGNC:28318UniProt: A6PVS8
14PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingsign or symptommathematical abilityrespiratory failureneurodegenerative disease
✦AI Summary

LRRIQ3 (leucine rich repeats and IQ motif containing 3) is a protein-coding gene on chromosome 1 with documented protein binding capacity. While its precise molecular function remains incompletely characterized, LRRIQ3 has been identified as a candidate gene associated with neurodevelopmental phenotypes and complex behavioral traits. In a large exome sequencing study of 152 consanguineous families with neurodevelopmental disorders, a homozygous truncating variant in LRRIQ3 was identified as a convincing recessive candidate for intellectual disability, suggesting a potential role in neurodevelopmental processes 1. Additionally, LRRIQ3 has been implicated in opioid-related phenotypes; a genetic variant (rs640561) near LRRIQ3 achieved genome-wide significance in association with problematic opioid prescription use in a GWAS of 132,113 individuals 2, and this same variant showed nominal association with persistent opioid use after surgery 3. LRRIQ3 has also been identified in studies of chr1 pain and major depressive disorder as a gene in a gene-dense chr1 region associated with these conditions 4. Furthermore, LRRIQ3 expression levels have been associated with response to chemoradiotherapy in rectal cancer 5. These findings suggest LRRIQ3 may participate in neurodevelopmental and behavioral processes, though confirmation in independent families is warranted.

Sources cited
1
Homozygous truncating variant in LRRIQ3 identified as convincing recessive candidate gene for intellectual disability in consanguineous families
PMID: 28097321
2
Genetic variant rs640561 near LRRIQ3 achieved genome-wide significance for problematic opioid prescription use (GWAS, N=132,113)
PMID: 34728798
3
LRRIQ3 variant rs640561 showed nominal association (p=0.015) with persistent opioid use after surgery
PMID: 39385445
4
LRRIQ3 located in gene-dense region on chromosome 1 associated with major depressive disorder and chronic pain via conditional FDR analysis
PMID: 31748543
5
LRRIQ3 expression level part of 4-gene signature predicting response to chemoradiotherapy in rectal cancer (81.3% accuracy)
PMID: 24316942
Disease Associationsⓘ20
sign or symptomOpen Targets
0.30Weak
mathematical abilityOpen Targets
0.29Weak
respiratory failureOpen Targets
0.27Weak
neurodegenerative diseaseOpen Targets
0.25Weak
insomniaOpen Targets
0.19Weak
health study participationOpen Targets
0.18Weak
response to paracetamolOpen Targets
0.16Weak
PainOpen Targets
0.15Weak
cardiac arrhythmiaOpen Targets
0.14Weak
alcohol drinkingOpen Targets
0.12Weak
Abnormality of the skeletal systemOpen Targets
0.12Weak
type 1 diabetes mellitusOpen Targets
0.12Weak
HydrocephalusOpen Targets
0.11Weak
Abnormality of the gastrointestinal tractOpen Targets
0.10Weak
dyshidrosisOpen Targets
0.10Weak
food allergyOpen Targets
0.09Suggestive
pulmonary vascular congestionOpen Targets
0.09Suggestive
osteoarthritis, handOpen Targets
0.09Suggestive
placenta praeviaOpen Targets
0.06Suggestive
Abnormal sperm morphologyOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TMC7Protein interaction74%FPGTProtein interaction74%FAM227BProtein interaction73%
Tissue Expression6 tissues
Heart
100%
Liver
84%
Bone Marrow
78%
Brain
67%
Ovary
40%
Lung
24%
Gene Interaction Network
Click a node to explore
LRRIQ3TMC7FPGTFAM227B
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt A6PVS8
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.60LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.26 [1.00–1.60]
RankingsWhere LRRIQ3 stands among ~20K protein-coding genes
  • #15,915of 20,598
    Most Researched14
  • #15,679of 17,882
    Most Constrained (LOEUF)1.60
Genes detectedLRRIQ3
Sources retrieved5 papers
Response time—
📄 Sources
5
1
Diagnostic Yield and Novel Candidate Genes by Exome Sequencing in 152 Consanguineous Families With Neurodevelopmental Disorders.
PMID: 28097321
JAMA Psychiatry · 2017
1.00
2
Genome-wide association study of problematic opioid prescription use in 132,113 23andMe research participants of European ancestry.
PMID: 34728798
Mol Psychiatry · 2021
0.80
3
Genetic Associations of Persistent Opioid Use After Surgery Point to OPRM1 but Not Other Opioid-Related Loci as the Main Driver of Opioid Use Disorder.
PMID: 39385445
Genet Epidemiol · 2025
0.60
4
Prediction of response to preoperative chemoradiotherapy in rectal cancer by using reverse transcriptase polymerase chain reaction analysis of four genes.
PMID: 24316942
Dis Colon Rectum · 2014
0.40
5
Identification of novel common variants associated with chronic pain using conditional false discovery rate analysis with major depressive disorder and assessment of pleiotropic effects of LRFN5.
PMID: 31748543
Transl Psychiatry · 2019
0.20