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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LY6D
lymphocyte antigen 6 family member D
Chromosome 8 · 8q24.3
NCBI Gene: 8581Ensembl: ENSG00000167656.5HGNC: HGNC:13348UniProt: Q14210
23PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindinglymphocyte differentiationcell surfacemembranetinea pedisdermatophytosisdermatomycosisstomach disease
✦AI Summary

LY6D (lymphocyte antigen 6 family member D) is a GPI-anchored cell surface protein with multiple roles in immune development and cancer biology. In normal development, LY6D marks early lymphoid progenitor commitment, particularly in plasmacytoid dendritic cell (pDC) lineage specification where SiglecH+Ly6D+ precursors define pDC differentiation along the IL-7R+ lymphoid branch 1. In disease contexts, LY6D functions as a marker of cancer stem cells and tumor-initiating populations across multiple malignancies. In pancreatic ductal adenocarcinoma, LY6D+ cells represent a distinct gastric-like stem cell state that emerges early during tumor initiation and persists throughout progression; mechanistically, LY6D scaffolds lipid raft-associated kinase networks driving FOSL1-dependent epigenetic reprogramming 2. In extrahepatic cholangiocarcinoma, basal-like LY6D+ cancer cells display stemness, drug resistance, and interferon-responsive features sustained by ISG15-enriched microenvironments 3. LY6D is upregulated in laryngeal squamous cell carcinoma where it correlates with chemoresistance to multiple agents and lymph node metastasis 4. In inflammatory conditions, IL-1β induces LY6D+ club cell transdifferentiation that promotes neutrophil recruitment in chr8 rhinosinusitis with nasal polyps 5. Additionally, LY6D serves as a biomarker in cancer diagnosis and correlates with poor prognosis 67, while its expression is regulated by the YB-1-KLF5 axis in basal-like breast cancer 8.

Sources cited
1
LY6D expression defines plasmacytoid dendritic cell lineage commitment along IL-7R+ lymphoid progenitor branch
PMID: 29925996
2
LY6D marks persistent stem-like gastric-like cells that drive pancreatic cancer initiation and progression through GPI-anchored lipid raft kinase scaffolding
PMID: 41545197
3
Basal-like LY6D+ cancer cells in extrahepatic cholangiocarcinoma display stemness, drug resistance, and ISG15-dependent features
PMID: 40551145
4
LY6D is upregulated in laryngeal cancer, correlates with chemoresistance and metastasis, and marks cancer stem cells
PMID: 32178572
5
IL-1β induces LY6D+ club cell transdifferentiation that promotes neutrophil recruitment in chronic rhinosinusitis
PMID: 39438439
6
LY6D is a component of protein biomarker panel for endometrial cancer detection in cervical-vaginal fluid
PMID: 38513301
7
LY6D is located on chromosome 8q24.3, a frequently amplified locus in cancer, and serves as biomarker for poor prognosis
PMID: 31068932
8
LY6D expression is co-regulated by YB-1-KLF5 axis in basal-like breast cancer to promote cancer cell proliferation
PMID: 35022570
Disease Associationsⓘ20
tinea pedisOpen Targets
0.44Moderate
dermatophytosisOpen Targets
0.41Moderate
dermatomycosisOpen Targets
0.31Weak
stomach diseaseOpen Targets
0.12Weak
neoplasmOpen Targets
0.10Weak
attention deficit hyperactivity disorderOpen Targets
0.09Suggestive
skin basal cell carcinomaOpen Targets
0.08Suggestive
attention deficit-hyperactivity disorder 8Open Targets
0.07Suggestive
hereditary attention deficit-hyperactivity disorderOpen Targets
0.07Suggestive
intellectual disability, autosomal recessive 59Open Targets
0.07Suggestive
schizophrenia 15Open Targets
0.07Suggestive
posterior cortical atrophyOpen Targets
0.06Suggestive
non-small cell lung carcinomaOpen Targets
0.06Suggestive
non-alcoholic fatty liver diseaseOpen Targets
0.05Suggestive
Phelan-McDermid syndromeOpen Targets
0.05Suggestive
chronic rhinosinusitis with nasal polypsOpen Targets
0.05Suggestive
lung adenocarcinomaOpen Targets
0.04Suggestive
X-linked non-syndromic intellectual disabilityOpen Targets
0.04Suggestive
Potocki-Lupski syndromeOpen Targets
0.04Suggestive
urinary bladder carcinomaOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
SIGLEC14Shared pathway100%SIGLEC11Shared pathway100%MUC16Shared pathway100%SIGLEC12Shared pathway100%SIGLEC8Shared pathway100%SIGLEC7Shared pathway100%
Tissue Expression6 tissues
Liver
100%
Ovary
61%
Brain
50%
Lung
43%
Heart
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
LY6DSIGLEC14SIGLEC11MUC16SIGLEC12SIGLEC8SIGLEC7
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q14210
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.92LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.44 [0.77–1.92]
RankingsWhere LY6D stands among ~20K protein-coding genes
  • #13,457of 20,598
    Most Researched23
  • #17,425of 17,882
    Most Constrained (LOEUF)1.92
Genes detectedLY6D
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
IL-1β-induced epithelial cell and fibroblast transdifferentiation promotes neutrophil recruitment in chronic rhinosinusitis with nasal polyps.
PMID: 39438439
Nat Commun · 2024
1.00
2
Deciphering cholangiocarcinoma heterogeneity and specific progenitor cell niche of extrahepatic cholangiocarcinoma at single-cell resolution.
PMID: 40551145
J Hematol Oncol · 2025
0.90
3
PMID: 32178572
Stem Cells Dev · 2020
0.80
4
Distinct progenitor lineages contribute to the heterogeneity of plasmacytoid dendritic cells.
PMID: 29925996
Nat Immunol · 2018
0.70
5
Detection of endometrial cancer in cervico-vaginal fluid and blood plasma: leveraging proteomics and machine learning for biomarker discovery.
PMID: 38513301
EBioMedicine · 2024
0.60