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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LY6E
lymphocyte antigen 6 family member E
Chromosome 8 · 8q24.3
NCBI Gene: 4061Ensembl: ENSG00000160932.12HGNC: HGNC:6727UniProt: Q16553
42PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindinghost-mediated suppression of symbiont invasionacetylcholine receptor bindingacetylcholine receptor signaling pathway
✦AI Summary

LY6E (lymphocyte antigen 6 family member E) is an interferon-stimulated gene that functions as a multifaceted antiviral and immunological regulator. Primarily, LY6E restricts viral entry by inhibiting spike protein-mediated membrane fusion across multiple viral families 1. The protein adopts a microtubule-like organization upon viral infection and enhances viral uncoating following endosomal escape 2. LY6E demonstrates broad antiviral activity against enveloped viruses including coronaviruses (SARS-CoV, SARS-CoV-2, MERS-CoV), respiratory syncytial virus, and flaviviruses, though not all viruses require LY6E for cellular entry 13. Mechanistically, LY6E is induced by interferon signaling and STING pathway activation, conferring cell-intrinsic protection in multiple cell types including epithelial cells and B cells 45. Clinical significance emerges across infectious and non-infectious contexts: elevated Ly6E+ neutrophils predict anti-PD1 immunotherapy response with >0.9 AUC in cancer patients 4, while LY6E expression correlates with treatment response in chr8 hepatitis B 6 and RSV infection 3. Beyond antiviral immunity, LY6E-derived transcripts promote breast cancer metastasis through EGFR pathway activation 7, highlighting complex pleiotropic roles in both protective immunity and oncogenesis.

Sources cited
1
LY6E restricts coronavirus infection by inhibiting spike protein-mediated membrane fusion and is critical for immune control of CoV disease
PMID: 32704094
2
LY6E is an interferon-stimulated gene that enhances replication of certain viruses and contributes to antiviral responses
PMID: 21478870
3
LY6E is upregulated upon RSV infection and inhibits RSV replication; serves as a diagnostic biomarker for pediatric RSV infection
PMID: 39313785
4
LY6E protects respiratory epithelial cells from SARS-CoV-2 infection and is essential for coronavirus resistance in the respiratory tract
PMID: 37443277
5
Ly6E-expressing neutrophils induced by STING signaling predict immunotherapy response with high accuracy in cancer patients
PMID: 38181798
6
LY6E-derived lncRNA and encoded protein promote breast cancer metastasis through EGFR/PI3K pathway activation
PMID: 38114778
7
LY6E expression levels in PBMCs correlate with interferon-alpha treatment response and HBsAg clearance in chronic hepatitis B
PMID: 40089754
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
OAS1Protein interaction99%MX1Protein interaction97%IFIT3Protein interaction94%ISG15Protein interaction94%RSAD2Protein interaction94%IFI44Protein interaction93%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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LY6EOAS1MX1IFIT3ISG15RSAD2IFI44
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q16553
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.14LoF Tolerant
pLIⓘ
0.16Tolerant
Observed/Expected LoF0.50 [0.24–1.14]
RankingsWhere LY6E stands among ~20K protein-coding genes
  • #9,900of 20,598
    Most Researched42
  • #11,778of 17,882
    Most Constrained (LOEUF)1.14
Genes detectedLY6E
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Interferon-stimulated neutrophils as a predictor of immunotherapy response.
PMID: 38181798
Cancer Cell · 2024
1.00
2
A diverse range of gene products are effectors of the type I interferon antiviral response.
PMID: 21478870
Nature · 2011
0.90
3
Innovative biomarkers TCN2 and LY6E can significantly inhibit respiratory syncytial virus infection.
PMID: 39313785
J Transl Med · 2024
0.80
4
LY6E impairs coronavirus fusion and confers immune control of viral disease.
PMID: 32704094
Nat Microbiol · 2020
0.70
5
LY6E is a pan-coronavirus restriction factor in the respiratory tract.
PMID: 37443277
Nat Microbiol · 2023
0.60