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8 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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LY6G6C
lymphocyte antigen 6 family member G6C
Chromosome 6 · 6p21.33
NCBI Gene: 80740Ensembl: ENSG00000204421.3HGNC: HGNC:13936UniProt: A0A1U9X7Z1
14PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
external side of plasma membraneprotein bindingidentical protein bindingprotein-containing complex
✦AI Summary

LY6G6C is a lymphocyte antigen 6 superfamily member that functions as a GPI-anchored cell surface immunoregulatory protein 1. The protein is highly expressed at the leading edges of cells on filopodia, structures involved in cell adhesion and migration 1. Functionally, LY6G6C is glycosylated and can form part of larger protein complexes 1, with potential ligands expressed on hematopoietic cell lines, suggesting a role in cell differentiation 1. Disease relevance: LY6G6C has been identified as an independent prognostic risk factor for colorectal cancer, contributing to machine learning-based survival prediction systems 2. It is also implicated in susceptibility to HIV-related Kaposi's sarcoma through a class III MHC haplotype 3, and genome-wide association studies identified LY6G6C as a susceptibility gene for coronary artery disease with significantly altered expression between patients and controls 4. Additionally, LY6G6C upregulation may serve as a protective biomarker for radiation-induced oral mucositis 5, and it is part of an interferon-responsive gene panel involved in gut microbiota regulation 6. These findings suggest LY6G6C plays multifaceted roles in immune regulation, cell-cell interactions, and disease pathogenesis across multiple conditions.

Sources cited
1
LY6G6C is a GPI-anchored cell surface protein with glycosylation, highly expressed at cell leading edges on filopodia; potential role in hematopoietic cell differentiation through ligand interactions
PMID: 17008713
2
LY6G6C identified as one of 20 independent risk factors for colorectal cancer prognosis in machine learning survival prediction model
PMID: 35395711
3
LY6G6C identified as susceptibility gene for coronary artery disease with significantly different expression between CAD patients and controls
PMID: 33725943
4
LY6G6C upregulation before radiation therapy associated with none/mild mucositis but not ulcerative mucositis, suggesting protective biomarker potential
PMID: 29338018
5
LY6G6C is part of interferon-inducible gene panel with higher expression in certain mouse strains, involved in gut microbiota regulation
PMID: 23951309
6
LY6G6C variant (rs1065356) part of MHC class III susceptibility haplotype associated with HIV-related Kaposi's sarcoma risk
PMID: 25008864
7
LY6G6C identified as signature gene in papillary thyroid carcinoma lymph node metastasis prediction model with significantly higher expression in metastatic patients
PMID: 41656803
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
LY6G5CProtein interaction80%LY6G6DProtein interaction76%LY6G5BCo-mentioned in literature29%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
Click a node to explore
LY6G6CLY6G5CLY6G6DLY6G5B
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt O95867
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.47LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.91 [0.58–1.47]
RankingsWhere LY6G6C stands among ~20K protein-coding genes
  • #15,917of 20,598
    Most Researched14
  • #14,989of 17,882
    Most Constrained (LOEUF)1.47
Genes detectedLY6G6C
Sources retrieved8 papers
Response time—
📄 Sources
8▼
1
Bioinformatics analysis reveals immune prognostic markers for overall survival of colorectal cancer patients: a novel machine learning survival predictive system.
PMID: 35395711
BMC Bioinformatics · 2022
1.00
2
Oral mucosa tissue gene expression profiling before, during, and after radiation therapy for tonsil squamous cell carcinoma.
PMID: 29338018
PLoS One · 2018
0.88
3
Integration of summary data from GWAS and eQTL studies identified novel risk genes for coronary artery disease.
PMID: 33725943
Medicine (Baltimore) · 2021
0.75
4
Characterization of the five novel Ly-6 superfamily members encoded in the MHC, and detection of cells expressing their potential ligands.
PMID: 17008713
Protein Sci · 2006
0.63
5
Differences in mucosal gene expression in the colon of two inbred mouse strains after colonization with commensal gut bacteria.
PMID: 23951309
PLoS One · 2013
0.50