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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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LYPD3
LY6/PLAUR domain containing 3
Chromosome 19 · 19q13.31
NCBI Gene: 27076Ensembl: ENSG00000124466.9HGNC: HGNC:24880UniProt: B2RBR3
52PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingGO:0005615negative regulation of smooth muscle cell apoptotic processplasma membranebreast carcinomacancerhead and neck squamous cell carcinomaneoplasm
✦AI Summary

LYPD3 is a highly glycosylated cell surface protein that functions as a tumor-promoting factor across multiple cancer types. Mechanistically, LYPD3 supports cell migration and invasion, with its glycosylation modulating subcellular localization and anti-metastatic activity 1. In lung adenocarcinoma, LYPD3 expression is elevated and positively correlated with tumor stage and poor survival outcomes 2. LYPD3 regulates malignant phenotypes through multiple pathways: the JUP/AGR2/LYPD3 axis maintains melanoma stemness and promotes glycolysis 3, while LYPD3 can be targeted by miR-151-5p in head and neck cancer to suppress metastasis 1. In lung cancer, LYPD3 associates with immune cell infiltration and altered immunotherapy response 4, and serves as a coefficient factor in pyrimidine metabolism-related prognostic signatures 5. LYPD3 expression is regulated by DNA methylation in its promoter region 2. Additionally, LYPD3 protects vascular smooth muscle cells from apoptosis in abdominal aortic aneurysm through a circCBFB/miR-28-5p regulatory axis 6. In breast cancer, the FOXA1/GRHL2-regulated LYPD3/AGR2 pathway drives endocrine therapy resistance, and blocking LYPD3 or AGR2 inhibits resistant tumor growth 7. These findings establish LYPD3 as a multifunctional oncogenic protein with prognostic and therapeutic significance.

Sources cited
1
LYPD3 upregulation associates with poor prognosis in lung cancer and correlates with immune cell infiltration and immunotherapy response
PMID: 38617517
2
miR-151-5p targets LYPD3 to promote HNSCC invasion and migration; LYPD3 glycosylation modulates its anti-metastatic function
PMID: 39009906
3
JUP regulates AGR2/LYPD3 to maintain melanoma stemness and promote glycolysis; LYPD3 associates with immunosuppressive tumor microenvironment
PMID: 37924160
4
LYPD3 is highly expressed in lung adenocarcinoma, correlates with tumor stage and poor survival, and is regulated by promoter methylation
PMID: 32040344
5
LYPD3 is a major coefficient factor in pyrimidine metabolism-related prognostic signature for lung adenocarcinoma and promotes malignant progression
PMID: 40084259
6
FOXA1/GRHL2 regulate LYPD3 and its ligand AGR2 in endocrine therapy-resistant breast cancer; blocking LYPD3 or AGR2 inhibits resistant tumor growth
PMID: 31644911
7
LYPD3 protects vascular smooth muscle cells from apoptosis through circCBFB/miR-28-5p regulatory axis in abdominal aortic aneurysm
PMID: 32151690
8
LYPD3 is upregulated in lung adenocarcinoma tissues and associates with programmed cell death pathway changes affecting prognosis
PMID: 39602465
Disease Associationsⓘ20
breast carcinomaOpen Targets
0.29Weak
cancerOpen Targets
0.08Suggestive
head and neck squamous cell carcinomaOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.08Suggestive
acute myeloid leukemiaOpen Targets
0.07Suggestive
hepatocellular carcinomaOpen Targets
0.07Suggestive
melanomaOpen Targets
0.07Suggestive
laryngotracheoesophageal cleftOpen Targets
0.06Suggestive
colorectal cancerOpen Targets
0.05Suggestive
lung cancerOpen Targets
0.04Suggestive
hypertriglyceridemia 2Open Targets
0.04Suggestive
non-small cell lung carcinomaOpen Targets
0.04Suggestive
hypermetabolism due to uncoupled mitochondrial oxidative phosphorylation 2Open Targets
0.04Suggestive
lung adenocarcinomaOpen Targets
0.04Suggestive
Combined hyperlipidemiaOpen Targets
0.04Suggestive
fish eye diseaseOpen Targets
0.03Suggestive
Fish-eye diseaseOpen Targets
0.03Suggestive
esophageal adenocarcinomaOpen Targets
0.03Suggestive
hypoalphalipoproteinemia, primary, 1Open Targets
0.03Suggestive
familial hypercholesterolemiaOpen Targets
0.03Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
AGR2Protein interaction98%AGR3Protein interaction91%DAG1Protein interaction76%PLAURProtein interaction70%DIPK2AShared pathway33%GRIA4Shared pathway11%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
48%
Heart
14%
Lung
12%
Liver
11%
Brain
10%
Gene Interaction Network
Click a node to explore
LYPD3AGR2AGR3DAG1PLAURDIPK2AGRIA4
PROTEIN STRUCTURE
Preparing viewer…
PDB6IOM · 2.59 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.58LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF1.11 [0.79–1.58]
RankingsWhere LYPD3 stands among ~20K protein-coding genes
  • #8,577of 20,598
    Most Researched52
  • #15,591of 17,882
    Most Constrained (LOEUF)1.58
Genes detectedLYPD3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Comprehensive analysis of exosome gene LYPD3 and prognosis/immune cell infiltration in lung cancer.
PMID: 38617517
Transl Cancer Res · 2024
1.00
2
m6A-dependent mature miR-151-5p accelerates the malignant process of HNSCC by targeting LYPD3.
PMID: 39009906
Mol Biomed · 2024
0.90
3
LY6/PLAUR domain containing 3 (LYPD3) maintains melanoma cell stemness and mediates an immunosuppressive microenvironment.
PMID: 37924160
Biol Direct · 2023
0.80
4
Elevated Expression of
PMID: 32040344
DNA Cell Biol · 2020
0.70
5
Multi-omics and single-cell analysis reveals machine learning-based pyrimidine metabolism-related signature in the prognosis of patients with lung adenocarcinoma.
PMID: 40084259
Int J Med Sci · 2025
0.60