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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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LYPD6
LY6/PLAUR domain containing 6
Chromosome 2 · 2q23.2
NCBI Gene: 130574Ensembl: ENSG00000187123.16HGNC: HGNC:28751UniProt: Q86Y78
20PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingacetylcholine receptor inhibitor activitypositive regulation of canonical Wnt signaling pathwaycytoplasmneurodegenerative diseaseschizophreniahemolytic anemiaTesticular regression syndrome
✦AI Summary

LYPD6 (LY6/PLAUR domain containing 6) is a GPI-anchored three-finger protein that functions as a negative allosteric modulator of nicotinic acetylcholine receptors (nAChRs) in the brain 1. The protein specifically inhibits α3β4 and α7 nAChR currents with IC50 values of approximately 35 μM and 10 μM, respectively, reducing maximal current amplitude by 30-50% without affecting ACh binding affinity 1. LYPD6 is synaptically enriched and forms direct protein complexes with multiple nAChR subtypes in human brain extracts 2. Functionally, LYPD6 inhibits nicotine-induced calcium influx and attenuates nicotine-evoked hippocampal currents 21. The protein suppresses long-term potentiation in hippocampal slices, similar to α-bungarotoxin, indicating its role in synaptic plasticity regulation 1. Loss of Lypd6 in knockout mice results in reduced anxiety-like behavior and enhanced nicotine responses, with increased nicotine-evoked currents in dorsal raphe neurons 3. Additionally, LYPD6 acts as a positive regulator of Wnt/β-catenin signaling through interactions with the coreceptor LRP6 via its NxI motif 4. The protein is upregulated by perinatal nicotine exposure, suggesting developmental regulation of cholinergic signaling 2.

Sources cited
1
LYPD6 specifically inhibits α3β4 and α7 nAChR currents as a negative allosteric modulator
PMID: 34631692
2
LYPD6 forms direct complexes with nAChRs and inhibits nicotine-induced signaling
PMID: 27344019
3
Loss of Lypd6 reduces anxiety-like behavior and enhances nicotine responses
PMID: 29195920
4
LYPD6 acts as a Wnt signaling enhancer through LRP6 interactions via NxI motif
PMID: 30069874
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.31Weak
schizophreniaOpen Targets
0.29Weak
hemolytic anemiaOpen Targets
0.10Weak
Testicular regression syndromeOpen Targets
0.05Suggestive
46,XX ovotesticular disorder of sex developmentOpen Targets
0.04Suggestive
Leydig cell hypoplasiaOpen Targets
0.04Suggestive
type 1 diabetes nephropathyOpen Targets
0.04Suggestive
testicular agenesisOpen Targets
0.03Suggestive
cervical carcinomaOpen Targets
0.03Suggestive
46,XY sex reversal 11Open Targets
0.03Suggestive
46,XY partial gonadal dysgenesisOpen Targets
0.03Suggestive
46,XY complete gonadal dysgenesisOpen Targets
0.03Suggestive
46,XY gonadal dysgenesis - motor and sensory neuropathyOpen Targets
0.03Suggestive
46,XY gonadal dysgenesis-motor and sensory neuropathy syndromeOpen Targets
0.03Suggestive
central nervous system infectionOpen Targets
0.03Suggestive
gestational diabetesOpen Targets
0.03Suggestive
AnxietyOpen Targets
0.02Suggestive
autismOpen Targets
0.02Suggestive
Alzheimer diseaseOpen Targets
0.02Suggestive
small cell lung carcinomaOpen Targets
0.01Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
JRKShared pathway100%TMEM198Shared pathway100%LY6HProtein interaction95%SLURP1Protein interaction95%LYNX1Protein interaction95%FZD8Protein interaction82%
Tissue Expression6 tissues
Brain
100%
Ovary
15%
Heart
10%
Liver
8%
Lung
3%
Bone Marrow
2%
Gene Interaction Network
Click a node to explore
LYPD6JRKTMEM198LY6HSLURP1LYNX1FZD8
PROTEIN STRUCTURE
Preparing viewer…
PDB6GBI · 1.25 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.08LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.68 [0.44–1.08]
RankingsWhere LYPD6 stands among ~20K protein-coding genes
  • #14,193of 20,598
    Most Researched20
  • #10,937of 17,882
    Most Constrained (LOEUF)1.08
Genes detectedLYPD6
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Identification and characterization of human LYPD6, a new member of the Ly-6 superfamily.
PMID: 19653121
Mol Biol Rep · 2010
1.00
2
Structural Diversity and Dynamics of Human Three-Finger Proteins Acting on Nicotinic Acetylcholine Receptors.
PMID: 33019770
Int J Mol Sci · 2020
0.90
3
Human Three-Finger Protein Lypd6 Is a Negative Modulator of the Cholinergic System in the Brain.
PMID: 34631692
Front Cell Dev Biol · 2021
0.80
4
Structure of the Wnt signaling enhancer LYPD6 and its interactions with the Wnt coreceptor LRP6.
PMID: 30069874
FEBS Lett · 2018
0.70
5
Loss of Lypd6 leads to reduced anxiety-like behaviour and enhanced responses to nicotine.
PMID: 29195920
Prog Neuropsychopharmacol Biol Psychiatry · 2018
0.60