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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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MED13L
mediator complex subunit 13L
Chromosome 12 Β· 12q24.21
NCBI Gene: 23389Ensembl: ENSG00000123066.9HGNC: HGNC:22962UniProt: Q71F56
71PubMed Papers
21Diseases
0Drugs
292Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
transcription coactivator activitypositive regulation of transcription by RNA polymerase IInucleoplasmmediator complexcardiac anomalies - developmental delay - facial dysmorphism syndromeIntellectual disabilityCardiac anomalies-developmental delay-facial dysmorphism syndromeCongenitally uncorrected transposition of the great arteries
✦AI Summary

MED13L encodes a component of the Mediator complex kinase module, which functions as a transcriptional coactivator essential for RNA polymerase II-dependent gene transcription 1. As part of the CDK8-kinase module alongside MED12, CDK8, and CCNC, MED13L facilitates the transfer of genetic information from DNA-binding proteins to RNA polymerase II during transcription initiation 1. The protein plays a critical role in neurological development, as MED13L haploinsufficiency causes intellectual disability through transcriptional defects 1. De novo mutations in MED13L are associated with a neurodevelopmental syndrome characterized by intellectual disability, developmental delay, speech impairment, hypotonia, and distinctive facial features 23. Both loss-of-function mutations (deletions, duplications, nonsense, frameshift, splicing variants) and missense mutations can cause disease, with missense variants potentially associated with more severe phenotypes including epilepsy 13. Mouse models with heterozygous Med13l deletion recapitulate key syndrome features including growth delays and craniofacial anomalies 4. Additionally, MED13L appears to regulate other cellular processes, as variants at this locus associate with gut microbiota composition 5, and MED13L can induce expression of oncogenic lncRNAs in cancer contexts 6.

Sources cited
1
MED13L is a kinase module subunit involved in transcription initiation and haploinsufficiency causes intellectual disability with transcriptional defects
PMID: 31155615
2
De novo mutations in MED13L are identified in patients with moderate to severe intellectual disability
PMID: 25356899
3
MED13L syndrome is characterized by intellectual disability, speech impairment, hypotonia, and facial dysmorphism, with missense mutations potentially causing more severe phenotypes
PMID: 32646507
4
Mouse models with heterozygous Med13l deletion exhibit growth delays and craniofacial anomalies resembling human syndrome
PMID: 40919805
5
Variants at the MED13L locus associate with gut microbiota composition
PMID: 35115689
6
MED13L can induce expression of oncogenic lncRNAs in cancer contexts
PMID: 37999979
Disease Associationsβ“˜21
cardiac anomalies - developmental delay - facial dysmorphism syndromeOpen Targets
0.80Strong
Intellectual disabilityOpen Targets
0.67Moderate
Cardiac anomalies-developmental delay-facial dysmorphism syndromeOpen Targets
0.65Moderate
Congenitally uncorrected transposition of the great arteriesOpen Targets
0.64Moderate
genetic disorderOpen Targets
0.55Moderate
Neurodevelopmental disorderOpen Targets
0.47Moderate
cutaneous melanomaOpen Targets
0.44Moderate
Global developmental delayOpen Targets
0.41Moderate
smoking initiationOpen Targets
0.39Weak
syndromic intellectual disabilityOpen Targets
0.37Weak
neurodegenerative diseaseOpen Targets
0.37Weak
Rare genetic intellectual disabilityOpen Targets
0.37Weak
Delayed speech and language developmentOpen Targets
0.34Weak
vesicoureteral refluxOpen Targets
0.34Weak
Motor delayOpen Targets
0.34Weak
StrabismusOpen Targets
0.34Weak
cervical carcinomaOpen Targets
0.32Weak
trauma complicationOpen Targets
0.32Weak
hair colorOpen Targets
0.31Weak
autism spectrum disorderOpen Targets
0.29Weak
Impaired intellectual development and distinctive facial features with or without cardiac defectsUniProt
Pathogenic Variants292
NM_015335.5(MED13L):c.2844del (p.Met949fs)Likely pathogenic
Intellectual disability|Cardiac anomalies - developmental delay - facial dysmorphism syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 949
NM_015335.5(MED13L):c.6485C>T (p.Thr2162Met)Pathogenic
Cardiac anomalies - developmental delay - facial dysmorphism syndrome|not provided|Dextro-looped transposition of the great arteries
β˜…β˜…β˜†β˜†2025β†’ Residue 2162
NM_015335.5(MED13L):c.5278C>T (p.Arg1760Ter)Pathogenic
not provided|Intellectual disability|Cardiac anomalies - developmental delay - facial dysmorphism syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 1760
NM_015335.5(MED13L):c.4417C>T (p.Gln1473Ter)Pathogenic
Cardiac anomalies - developmental delay - facial dysmorphism syndrome|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 1473
NM_015335.5(MED13L):c.6488C>T (p.Ser2163Leu)Pathogenic
Cardiac anomalies - developmental delay - facial dysmorphism syndrome;Dextro-looped transposition of the great arteries|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 2163
NM_015335.5(MED13L):c.442C>T (p.Arg148Ter)Pathogenic
Intellectual disability|not provided|Cardiac anomalies - developmental delay - facial dysmorphism syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 148
NM_015335.5(MED13L):c.3154C>T (p.Arg1052Ter)Pathogenic
Intellectual disability|Cardiac anomalies - developmental delay - facial dysmorphism syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 1052
NM_015335.5(MED13L):c.2597C>T (p.Pro866Leu)Pathogenic
not provided|Cardiac anomalies - developmental delay - facial dysmorphism syndrome|Kabuki-like syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 866
NM_015335.5(MED13L):c.5000_5001del (p.Ser1667fs)Pathogenic
Cardiac anomalies - developmental delay - facial dysmorphism syndrome|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 1667
NM_015335.5(MED13L):c.2579A>G (p.Asp860Gly)Pathogenic
Cardiac anomalies - developmental delay - facial dysmorphism syndrome|Dextro-looped transposition of the great arteries|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 860
NM_015335.5(MED13L):c.5990dup (p.Leu1997fs)Pathogenic
Cardiac anomalies - developmental delay - facial dysmorphism syndrome|Dextro-looped transposition of the great arteries|MED13L-related disorder
β˜…β˜…β˜†β˜†2024β†’ Residue 1997
NM_015335.5(MED13L):c.1135C>T (p.Arg379Ter)Pathogenic
Global developmental delay|Dextro-looped transposition of the great arteries|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 379
NM_015335.5(MED13L):c.6280C>T (p.Pro2094Ser)Pathogenic
not provided|Dextro-looped transposition of the great arteries
β˜…β˜…β˜†β˜†2023β†’ Residue 2094
NM_015335.5(MED13L):c.2071C>T (p.Gln691Ter)Pathogenic
Neurodevelopmental disorder|Dextro-looped transposition of the great arteries
β˜…β˜…β˜†β˜†2023β†’ Residue 691
NM_015335.5(MED13L):c.82dup (p.Thr28fs)Pathogenic
not provided|Cardiac anomalies - developmental delay - facial dysmorphism syndrome
β˜…β˜…β˜†β˜†2023β†’ Residue 28
NM_015335.5(MED13L):c.4087del (p.His1363fs)Pathogenic
Cardiac anomalies - developmental delay - facial dysmorphism syndrome|Inborn genetic diseases
β˜…β˜…β˜†β˜†2022β†’ Residue 1363
NM_015335.5(MED13L):c.4456C>T (p.Gln1486Ter)Likely pathogenic
not provided|Cardiac anomalies - developmental delay - facial dysmorphism syndrome
β˜…β˜…β˜†β˜†2022β†’ Residue 1486
NM_015335.5(MED13L):c.2065C>T (p.Gln689Ter)Pathogenic
Cardiac anomalies - developmental delay - facial dysmorphism syndrome
β˜…β˜…β˜†β˜†2022β†’ Residue 689
NM_015335.5(MED13L):c.2606C>T (p.Pro869Leu)Pathogenic
Cardiac anomalies - developmental delay - facial dysmorphism syndrome|MED13L-related disorder
β˜…β˜…β˜†β˜†2022β†’ Residue 869
NM_015335.5(MED13L):c.1708_1709del (p.Ser570fs)Pathogenic
Cardiac anomalies - developmental delay - facial dysmorphism syndrome|Intellectual disability|not provided
β˜…β˜…β˜†β˜†2021β†’ Residue 570
View on ClinVar β†—
Related Genes
MED19Protein interaction100%MED4Protein interaction100%MED10Protein interaction100%MED28Protein interaction100%MED18Protein interaction100%MED17Protein interaction100%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
33%
Lung
30%
Heart
28%
Brain
24%
Liver
12%
Gene Interaction Network
Click a node to explore
MED13LMED19MED4MED10MED28MED18MED17
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q71F56
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.04Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.02 [0.01–0.04]
RankingsWhere MED13L stands among ~20K protein-coding genes
  • #6,645of 20,598
    Most Researched71
  • #213of 5,498
    Most Pathogenic Variants292 Β· top 5%
  • #2of 17,882
    Most Constrained (LOEUF)0.04 Β· top 1%
Genes detectedMED13L
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Combined effects of host genetics and diet on human gut microbiota and incident disease in a single population cohort.
PMID: 35115689
Nat Genet Β· 2022
1.00
2
De novo mutations in moderate or severe intellectual disability.
PMID: 25356899
PLoS Genet Β· 2014
0.90
3
Variants in MED12L, encoding a subunit of the mediator kinase module, are responsible for intellectual disability associated with transcriptional defect.
PMID: 31155615
Genet Med Β· 2019
0.80
4
De novo mutations in MED13, a component of the Mediator complex, are associated with a novel neurodevelopmental disorder.
PMID: 29740699
Hum Genet Β· 2018
0.70
5
Report of a de novo c.2605C > T (p.Pro869Ser) change in the MED13L gene and review of the literature for MED13L-related intellectual disability.
PMID: 32646507
Ital J Pediatr Β· 2020
0.60