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8 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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MED9
mediator complex subunit 9
Chromosome 17 · 17p11.2
NCBI Gene: 55090Ensembl: ENSG00000141026.6HGNC: HGNC:25487UniProt: Q9NWA0
38PubMed Papers
15Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingnucleusmediator complexpositive regulation of transcription initiation by RNA polymerase IIneurodegenerative diseaseankylosing spondylitisbreast cancersign or symptom
✦AI Summary

MED9 (mediator complex subunit 9) is a component of the Mediator complex, a coactivator essential for RNA polymerase II-dependent transcription of nearly all protein-coding genes. MED9 functions as part of a multiprotein scaffold that bridges gene-specific regulatory proteins to the basal transcription machinery, facilitating preinitiation complex assembly and transcription initiation 1. The protein exhibits activator-specific transcriptional requirements, with yeast Med9/Cse2 required specifically for Bas1/Bas2-mediated amino acid biosynthetic gene transcription 1. Alternative splicing generates MED9 isoforms with distinct expression patterns; endothelial progenitor cells express multiple MED9 transcripts 2, while familial dilated cardiomyopathy (DCM) patients show significantly reduced full-length MED9 with compensatory upregulation of a short MED9 isoform, suggesting isoform-specific roles in cardiac function 3. Clinically, de novo copy number variants affecting MED9 have been identified in congenital heart disease patients, implicating MED9 in cardiac development through interactions with established cardiac transcription factors like GATA4 4. Additionally, MED9 represents a potential viral target; computational analysis identified MED9 as a predicted target of SARS-CoV-2-derived microRNA-like sequences, suggesting possible regulatory roles during viral infection 5.

Sources cited
1
MED9 (Med9/Cse2) is a Mediator subunit required for activator-specific RNA polymerase II transcription, specifically for Bas1/Bas2-mediated amino acid biosynthetic gene activation
PMID: 9891034
2
Alternative splicing generates novel MED9 transcripts in endothelial progenitor cells, with potential protein isoforms
PMID: 24952135
3
MED9 is significantly reduced in familial DCM patients compared to healthy subjects, with upregulation of a short MED9 isoform relative to full-length transcript, and MED9 shares regulatory motifs with GATA4 in cardiac development networks
PMID: 38474301
4
De novo copy number variants affecting MED9 are significantly enriched in congenital heart disease patients and interact with established CHD proteins NKX2-5 and GATA4
PMID: 25205790
5
MED9 is identified as a predicted target of SARS-CoV-2-derived miRNA-like sequences involved in modulating host transcription
PMID: 32547891
Disease Associationsⓘ15
neurodegenerative diseaseOpen Targets
0.51Moderate
ankylosing spondylitisOpen Targets
0.14Weak
breast cancerOpen Targets
0.12Weak
sign or symptomOpen Targets
0.08Suggestive
Abnormality of the skeletal systemOpen Targets
0.08Suggestive
circadian rhythmOpen Targets
0.02Suggestive
dilated cardiomyopathyOpen Targets
0.02Suggestive
infectionOpen Targets
0.01Suggestive
melanomaOpen Targets
0.01Suggestive
Alzheimer diseaseOpen Targets
0.00Suggestive
myopathyOpen Targets
0.00Suggestive
hypotrichosis 1Open Targets
0.00Suggestive
liver diseaseOpen Targets
0.00Suggestive
HeterotaxiaOpen Targets
0.00Suggestive
ovarian serous cystadenocarcinomaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
ZC3H13Protein interaction100%POLR2BProtein interaction100%POLR2EProtein interaction100%POLR2DProtein interaction100%POLR2HProtein interaction100%POLR2FProtein interaction100%
Tissue Expression6 tissues
Heart
100%
Liver
66%
Brain
57%
Bone Marrow
52%
Ovary
35%
Lung
28%
Gene Interaction Network
Click a node to explore
MED9ZC3H13POLR2BPOLR2EPOLR2DPOLR2HPOLR2F
PROTEIN STRUCTURE
Preparing viewer…
PDB7EMF · 3.50 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.08LoF Tolerant
pLIⓘ
0.02Tolerant
Observed/Expected LoF0.60 [0.35–1.08]
RankingsWhere MED9 stands among ~20K protein-coding genes
  • #10,515of 20,598
    Most Researched38
  • #10,999of 17,882
    Most Constrained (LOEUF)1.08
Genes detectedMED9
Sources retrieved8 papers
Response time—
📄 Sources
8▼
1
Familial Dilated Cardiomyopathy: A Novel MED9 Short Isoform Identification.
PMID: 38474301
Int J Mol Sci · 2024
1.00
2
Computational analysis of microRNA-mediated interactions in SARS-CoV-2 infection.
PMID: 32547891
PeerJ · 2020
0.88
3
Activator-specific requirement of yeast mediator proteins for RNA polymerase II transcriptional activation.
PMID: 9891034
Mol Cell Biol · 1999
0.75
4
RNA-Seq for the identification of novel Mediator transcripts in endothelial progenitor cells.
PMID: 24952135
Gene · 2014
0.63
5
Increased frequency of de novo copy number variants in congenital heart disease by integrative analysis of single nucleotide polymorphism array and exome sequence data.
PMID: 25205790
Circ Res · 2014
0.50