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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
MYT1L
myelin transcription factor 1 like
Chromosome 2 Β· 2p25.3
NCBI Gene: 23040Ensembl: ENSG00000186487.21HGNC: HGNC:7623UniProt: A0A2R8YF72
49PubMed Papers
21Diseases
0Drugs
101Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
DNA-binding transcription factor activity, RNA polymerase II-specificregulation of transcription by RNA polymerase IInervous system developmentneuron differentiationintellectual disability, autosomal dominant 39Intellectual disabilityautosomal dominant non-syndromic intellectual disabilityobesity
✦AI Summary

MYT1L is a neuron-specific transcription factor essential for neuronal identity and development. As a transcriptional repressor, MYT1L binds the 5'-AAGTT-3' core motif in gene promoters and recruits a SIN3B-containing multiprotein complex to silence non-neuronal genes during neuronal differentiation 1. Notably, MYT1L functions as a 'many-but-one' repressor, simultaneously suppressing multiple somatic lineage programs while preserving neural gene expression 1. It also represses negative regulators of neurogenesis, including Notch pathway components like HES1 1. Combined with ASCL1 and POU3F2, MYT1L efficiently reprograms fibroblasts into functional induced neurons 2. MYT1L deficiency primarily impairs maturation programs and repressive gene expression rather than activation, suggesting haploinsufficiency drives disease pathology 3. Pathogenic MYT1L variantsβ€”including missense, truncating mutations, and 2p25.3 microdeletionsβ€”cause neurodevelopmental disorder characterized by developmental delay (95%), intellectual disability (70%), behavioral disorders (98%), and epilepsy (23%) 4. De novo mutations recur in autism spectrum disorder 5, and mutations alter human cortical interneuron differentiation and electrophysiological properties 6. The gene has also been associated with fibromyalgia susceptibility 7.

Sources cited
1
MYT1L represses non-neuronal lineage programs via SIN3B recruitment and also represses Notch pathway components
PMID: 28379941
2
MYT1L combined with ASCL1 and POU3F2 converts fibroblasts to functional neurons
PMID: 20107439
3
MYT1L deficiency primarily impairs maturation programs and repressive functions, suggesting haploinsufficiency mechanism
PMID: 39604385
4
MYT1L pathogenic variants cause developmental delay, intellectual disability, behavioral disorders, and epilepsy
PMID: 34748075
5
MYT1L carries de novo recurrent mutations in autism spectrum disorder cohort
PMID: 27824329
6
MYT1L mutations alter human cortical interneuron differentiation and electrophysiology
PMID: 40020682
7
MYT1L associated with fibromyalgia susceptibility in genome-wide association studies
PMID: 30486733
Disease Associationsβ“˜21
intellectual disability, autosomal dominant 39Open Targets
0.76Strong
Intellectual disabilityOpen Targets
0.61Moderate
autosomal dominant non-syndromic intellectual disabilityOpen Targets
0.57Moderate
obesityOpen Targets
0.51Moderate
genetic disorderOpen Targets
0.51Moderate
Abnormality of the skeletal systemOpen Targets
0.43Moderate
Neurodevelopmental disorderOpen Targets
0.42Moderate
response to xenobiotic stimulusOpen Targets
0.39Weak
neurodegenerative diseaseOpen Targets
0.37Weak
syndromic complex neurodevelopmental disorderOpen Targets
0.37Weak
Neurodevelopmental delayOpen Targets
0.35Weak
schizophreniaOpen Targets
0.35Weak
autismOpen Targets
0.34Weak
ulcerative colitisOpen Targets
0.33Weak
Neurodevelopmental abnormalityOpen Targets
0.33Weak
multinodular goiterOpen Targets
0.33Weak
exostosisOpen Targets
0.32Weak
hypertensionOpen Targets
0.32Weak
cervical carcinomaOpen Targets
0.29Weak
poisoningOpen Targets
0.28Weak
Intellectual developmental disorder, autosomal dominant 39UniProt
Pathogenic Variants101
NM_001303052.2(MYT1L):c.223C>T (p.Arg75Ter)Pathogenic
not provided|MYT1L-related neurodevelopmental disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 75
NM_001303052.2(MYT1L):c.1585G>A (p.Gly529Arg)Pathogenic
Intellectual disability, autosomal dominant 39|not provided|See cases
β˜…β˜…β˜†β˜†2025β†’ Residue 529
NM_001303052.2(MYT1L):c.2642+1G>APathogenic
Intellectual disability, autosomal dominant 39|not provided
β˜…β˜…β˜†β˜†2025
NM_001303052.2(MYT1L):c.1532G>A (p.Cys511Tyr)Pathogenic
Intellectual disability, autosomal dominant 39|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 511
NM_001303052.2(MYT1L):c.1705C>T (p.Arg569Ter)Pathogenic
not provided|Intellectual disability, autosomal dominant 39
β˜…β˜…β˜†β˜†2025β†’ Residue 569
NM_001303052.2(MYT1L):c.535C>T (p.Arg179Ter)Pathogenic
not provided|Inborn genetic diseases|Intellectual disability, autosomal dominant 39
β˜…β˜…β˜†β˜†2024β†’ Residue 179
NM_001303052.2(MYT1L):c.1975C>T (p.Arg659Ter)Pathogenic
not provided|Neurodevelopmental disorder|Intellectual disability, autosomal dominant 39
β˜…β˜…β˜†β˜†2024β†’ Residue 659
NM_001303052.2(MYT1L):c.2221_2230del (p.Thr741fs)Pathogenic
Intellectual disability, autosomal dominant 39|Intellectual disability|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 741
NM_001303052.2(MYT1L):c.1706G>A (p.Arg569Gln)Pathogenic
not provided|Intellectual disability, autosomal dominant 39|Intellectual disability
β˜…β˜…β˜†β˜†2022β†’ Residue 569
NM_001303052.2(MYT1L):c.1807del (p.Arg603fs)Pathogenic
Neurodevelopmental disorder|Intellectual disability, autosomal dominant 39
β˜…β˜…β˜†β˜†2022β†’ Residue 603
NM_001303052.2(MYT1L):c.557dup (p.Asp187fs)Likely pathogenic
Intellectual disability, autosomal dominant 39
β˜…β˜…β˜†β˜†2022β†’ Residue 187
NM_001303052.2(MYT1L):c.1516T>C (p.Cys506Arg)Pathogenic
Intellectual disability, autosomal dominant 39|not provided
β˜…β˜…β˜†β˜†2022β†’ Residue 506
NM_001303052.2(MYT1L):c.2395C>T (p.Gln799Ter)Pathogenic
Intellectual disability, autosomal dominant 39
β˜…β˜†β˜†β˜†2026β†’ Residue 799
NM_001303052.2(MYT1L):c.2515_2518dup (p.Thr840fs)Pathogenic
Intellectual disability, autosomal dominant 39
β˜…β˜†β˜†β˜†2025β†’ Residue 840
NM_001303052.2(MYT1L):c.2802_2809dup (p.Ile937fs)Pathogenic
not provided
β˜…β˜†β˜†β˜†2025β†’ Residue 937
NM_001303052.2(MYT1L):c.639_646del (p.Glu213fs)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025β†’ Residue 213
NM_001303052.2(MYT1L):c.3086C>G (p.Ser1029Ter)Pathogenic
Intellectual disability, autosomal dominant 39
β˜…β˜†β˜†β˜†2025β†’ Residue 1029
NM_001303052.2(MYT1L):c.1619-1delPathogenic
not provided
β˜…β˜†β˜†β˜†2025
NM_001303052.2(MYT1L):c.322del (p.Glu108fs)Pathogenic
Inborn genetic diseases
β˜…β˜†β˜†β˜†2025β†’ Residue 108
NM_001303052.2(MYT1L):c.1586G>A (p.Gly529Glu)Pathogenic
Intellectual disability, autosomal dominant 39
β˜…β˜†β˜†β˜†2025β†’ Residue 529
View on ClinVar β†—
Related Genes
NEUROD2Protein interaction96%NKX2-2Protein interaction96%POU3F3Protein interaction96%POU3F2Protein interaction84%NEUROD1Protein interaction77%DLX1Protein interaction73%
Tissue Expression6 tissues
Brain
100%
Ovary
1%
Liver
1%
Lung
0%
Bone Marrow
0%
Heart
0%
Gene Interaction Network
Click a node to explore
MYT1LNEUROD2NKX2-2POU3F3POU3F2NEUROD1DLX1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q9UL68
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.09Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.04 [0.02–0.09]
RankingsWhere MYT1L stands among ~20K protein-coding genes
  • #8,981of 20,598
    Most Researched49
  • #767of 5,498
    Most Pathogenic Variants101 Β· top quartile
  • #33of 17,882
    Most Constrained (LOEUF)0.09 Β· top 1%
Genes detectedMYT1L
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
De novo genic mutations among a Chinese autism spectrum disorder cohort.
PMID: 27824329
Nat Commun Β· 2016
1.00
2
Direct conversion of fibroblasts to functional neurons by defined factors.
PMID: 20107439
Nature Β· 2010
0.90
3
MYT1L-associated neurodevelopmental disorder: description of 40 new cases and literature review of clinical and molecular aspects.
PMID: 34748075
Hum Genet Β· 2022
0.80
4
Fibromyalgia: Genetics and epigenetics insights may provide the basis for the development of diagnostic biomarkers.
PMID: 30486733
Mol Pain Β· 2019
0.70
5
2p25.3 microduplications involving MYT1L: further phenotypic characterization through an assessment of 16 new cases and a literature review.
PMID: 37188826
Eur J Hum Genet Β· 2023
0.60