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4 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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NANOGNB
NANOG neighbor homeobox
Chromosome 12 · 12p13.31
NCBI Gene: 360030Ensembl: ENSG00000205857.2HGNC: HGNC:24958UniProt: Q7Z5D8
7PubMed Papers
10Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Swiss-Prot Reviewed
DNA-binding transcription factor activityregulation of transcription by RNA polymerase IIDNA bindingnucleusneurodegenerative diseasecongenital anomaly of cardiovascular systemcolorectal adenocarcinomahidradenitis
✦AI Summary

NANOGNB (NANOG neighbor homeobox) is a divergent homeobox gene encoding a DNA-binding transcription factor that functions in early embryonic development. NANOGNB is an extremely divergent duplicate of NANOG that arose through gene duplication and radical sequence divergence in the mammalian lineage, sharing only 20% homeodomain identity with NANOG 1. Unlike NANOG, which maintains pluripotency throughout pre-implantation development, NANOGNB expression is temporally restricted to the 8-cell and morula stages, preceding blastocyst formation in human and bovine embryos 1. When ectopically expressed, NANOGNB downregulates genes showing expression pulses at the 8-cell stage, suggesting complementary developmental roles to NANOG 1. NANOGNB is identified as a key gene involved in embryonic genome activation and its dysregulation contributes to early embryonic arrest (EEA), a critical problem affecting 40% of infertile patients in assisted reproductive technology 2. Additionally, NANOGNB mutations have been identified as potential neoantigen sources in multifocal lung adenocarcinoma, with NANOGNB-encoded neopeptides demonstrating immunogenicity in promoting CD8+ T cell responses 3. Notably, NANOGNB has been lost in the mouse evolutionary lineage but retained in humans, indicating its specific importance in primate development 4.

Sources cited
1
NANOGNB is a divergent NANOG duplicate with 20% homeodomain identity, expressed specifically at 8-cell and morula stages with complementary developmental roles
PMID: 28446706
2
NANOGNB is a key gene in embryonic genome activation and mutations contribute to early embryonic arrest in assisted reproductive technology
PMID: 39325344
3
NANOGNB mutations generate immunogenic neopeptides that promote CD8+ T cell proliferation and IFN-γ secretion in lung adenocarcinoma
PMID: 39720721
4
NANOGNB has been lost in mouse lineage but retained in humans, indicating species-specific importance in primate development
PMID: 21679462
⚠Limited data available — This gene has 4 indexed publications. Summary and analysis may be incomplete.
Disease Associationsⓘ10
neurodegenerative diseaseOpen Targets
0.34Weak
congenital anomaly of cardiovascular systemOpen Targets
0.13Weak
colorectal adenocarcinomaOpen Targets
0.04Suggestive
hidradenitisOpen Targets
0.02Suggestive
lung adenocarcinomaOpen Targets
0.02Suggestive
cancerOpen Targets
0.00Suggestive
atherosclerosisOpen Targets
0.00Suggestive
breast cancerOpen Targets
0.00Suggestive
lung cancerOpen Targets
0.00Suggestive
acute myeloid leukemiaOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
DPRXProtein interaction72%ARGFXCo-mentioned in literature50%
Tissue Expression6 tissues
Liver
100%
Brain
63%
Ovary
50%
Lung
25%
Heart
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
NANOGNBDPRXARGFX
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q7Z5D8
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.51LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.94 [0.60–1.51]
RankingsWhere NANOGNB stands among ~20K protein-coding genes
  • #17,878of 20,598
    Most Researched7
  • #15,225of 17,882
    Most Constrained (LOEUF)1.51
Genes detectedNANOGNB
Sources retrieved4 papers
Response time—
📄 Sources
4
1
Unraveling the mysteries of early embryonic arrest: genetic factors and molecular mechanisms.
PMID: 39325344
J Assist Reprod Genet · 2024
1.00
2
In silico neoantigen screening and HLA multimer-based validation identify immunogenic neopeptide in multifocal lung adenocarcinoma.
PMID: 39720721
Front Immunol · 2024
0.75
3
A sister of
PMID: 28446706
Open Biol · 2017
0.50
4
The dynamics of vertebrate homeobox gene evolution: gain and loss of genes in mouse and human lineages.
PMID: 21679462
BMC Evol Biol · 2011
0.25