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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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NCLN
nicalin
Chromosome 19 · 19p13.3
NCBI Gene: 56926Ensembl: ENSG00000125912.12HGNC: HGNC:26923UniProt: Q969V3
105PubMed Papers
20Diseases
0Drugs
1Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingribosome bindingendoplasmic reticulum membranemembraneatrial fibrillationHirschsprung diseasesevere acute respiratory syndromeCOVID-19
✦AI Summary

NCLN (nicalin) is a membrane protein that functions primarily as a component of the multi-pass translocon (MPT) complex, mediating the insertion of multi-pass membrane proteins into cellular membranes 12. The MPT complex works in conjunction with the SEC61 complex, taking over protein insertion after SEC61 inserts the initial transmembrane segments by occluding the lateral gate to facilitate insertion of subsequent transmembrane regions 2. Beyond its role in protein trafficking, NCLN forms a membrane protein complex with NOMO (Nodal modulator) that regulates axial mesendoderm patterning during embryonic development through modulation of Nodal signaling pathways 3. Functional studies in zebrafish embryos demonstrate that NCLN is essential for enteric nervous system development, with knockdown experiments showing disrupted ENS formation 4. Additionally, NCLN has been implicated in various pathological contexts, including differential expression in Ebola survivors with optic neuropathy 5, association with oral squamous cell carcinoma 6, and potential involvement in skin pigmentation traits through genetic variants 7. The protein's diverse roles span from fundamental cellular processes like membrane protein insertion to complex developmental signaling and disease pathogenesis.

Sources cited
1
NCLN is a component of the multi-pass translocon complex that mediates insertion of multi-pass membrane proteins
PMID: 32820719
2
MPT complex occludes SEC61 lateral gate to promote insertion of subsequent transmembrane regions
PMID: 36261522
3
NCLN forms complex with NOMO involved in axial mesendoderm patterning through Nodal signaling
PMID: 17047369
4
NCLN is essential for enteric nervous system development in zebrafish
PMID: 28274275
5
NCLN differentially expressed in Ebola survivors with optic neuropathy
PMID: 40301432
6
NCLN expression correlates with oral squamous cell carcinoma
PMID: 32858118
7
NCLN genetic variants associated with skin pigmentation traits
PMID: 35349426
Disease Associationsⓘ20
atrial fibrillationOpen Targets
0.27Weak
Hirschsprung diseaseOpen Targets
0.18Weak
severe acute respiratory syndromeOpen Targets
0.13Weak
COVID-19Open Targets
0.12Weak
femur fractureOpen Targets
0.07Suggestive
gallbladder diseaseOpen Targets
0.04Suggestive
hypothyroidismOpen Targets
0.04Suggestive
Hashimoto's thyroiditisOpen Targets
0.04Suggestive
thyroid diseaseOpen Targets
0.03Suggestive
cardiomyopathyOpen Targets
0.02Suggestive
endometrial cancerOpen Targets
0.02Suggestive
neoplasmOpen Targets
0.01Suggestive
Optic neuropathyOpen Targets
0.01Suggestive
cancerOpen Targets
0.01Suggestive
oral squamous cell carcinomaOpen Targets
0.00Suggestive
hepatocellular carcinomaOpen Targets
0.00Suggestive
serous adenocarcinomaOpen Targets
0.00Suggestive
type 1 diabetes mellitusOpen Targets
0.00Suggestive
Alzheimer diseaseOpen Targets
0.00Suggestive
ischemiaOpen Targets
0.00Suggestive
Pathogenic Variants1
NM_020170.4(NCLN):c.496C>T (p.Gln166Ter)Likely pathogenic
Hirschsprung disease, susceptibility to, 1
☆☆☆☆2016→ Residue 166
View on ClinVar ↗
Related Genes
RPL39Protein interaction100%RPL13AProtein interaction100%RPL38Protein interaction100%RPL27Protein interaction100%RPL29Protein interaction100%RPL36AProtein interaction100%
Tissue Expression6 tissues
Liver
100%
Lung
78%
Bone Marrow
58%
Ovary
45%
Brain
26%
Heart
19%
Gene Interaction Network
Click a node to explore
NCLNRPL39RPL13ARPL38RPL27RPL29RPL36A
PROTEIN STRUCTURE
Preparing viewer…
PDB9C7U · 3.65 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.81LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.61 [0.46–0.81]
RankingsWhere NCLN stands among ~20K protein-coding genes
  • #4,544of 20,598
    Most Researched105 · top quartile
  • #4,867of 5,498
    Most Pathogenic Variants1
  • #6,832of 17,882
    Most Constrained (LOEUF)0.81
Genes detectedNCLN
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Liver cancer risk after HCV cure in patients with advanced liver disease without non-characterized nodules.
PMID: 34856322
J Hepatol · 2022
1.00
2
Ophthalmological manifestations and plasma markers of inflammation in Ebola survivors in post-treatment era.
PMID: 40301432
Sci Rep · 2025
0.90
3
Comprehensive Genomic Analysis of Cemento-Ossifying Fibroma.
PMID: 37995913
Mod Pathol · 2024
0.80
4
Whole exome sequencing coupled with unbiased functional analysis reveals new Hirschsprung disease genes.
PMID: 28274275
Genome Biol · 2017
0.70
5
Interaction of human oral cancer and the expression of virulence genes of dental pathogenic bacteria.
PMID: 32858118
Microb Pathog · 2020
0.60