HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
NECTIN1
nectin cell adhesion molecule 1
Chromosome 11 Β· 11q23.3
NCBI Gene: 5818Ensembl: ENSG00000110400.11HGNC: HGNC:9706UniProt: Q15223
117PubMed Papers
22Diseases
0Drugs
8Pathogenic Variants
FUNCTIONAL ROLE
Receptor
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
virus receptor activityadherens junctionidentical protein bindingcell adhesion molecule bindingcleft lip/palate-ectodermal dysplasia syndromeZlotogora-Ogur syndromeorofacial cleft 7cleft lip
✦AI Summary

NECTIN1 (nectin cell adhesion molecule 1) is a cell surface glycoprotein that functions primarily as a cell adhesion molecule and viral receptor. As a cell adhesion molecule, NECTIN1 mediates both homophilic and heterophilic cell-cell adhesion and localizes to adherens junctions 1. The protein serves as the major receptor for herpes simplex virus 1 (HSV-1) entry into host cells, with TMEFF1 acting as a restriction factor that interacts with NECTIN1 to impair viral entry in neurons 2. Interestingly, NECTIN1 exhibits opposing roles in different viral infections - while facilitating herpesvirus entry, it acts as a restriction factor for flaviviruses including bovine viral diarrhea virus by competing with CD46 for viral binding and inhibiting viral attachment 3. In cancer contexts, NECTIN1 functions as a tumor suppressor in melanoma, where its loss promotes tumor dissemination specifically under low IGF1 conditions 1. However, in hepatocellular carcinoma, NECTIN1 (PVRL1) is upregulated and stabilizes cell surface PVR, leading to immune evasion through TIGIT-mediated suppression of CD8+ T cells 4. NECTIN1 expression correlates with clinical outcomes in various cancers, including bladder urothelial carcinoma where it serves as a prognostic indicator 5.

Sources cited
1
NECTIN1 mediates cell adhesion, localizes to adherens junctions, and loss promotes melanoma dissemination under low IGF1 conditions
PMID: 36229674
2
NECTIN1 serves as the major HSV-1 receptor and interacts with TMEFF1 restriction factor in neurons
PMID: 39048830
3
NECTIN1 acts as a restriction factor for flaviviruses by competing with CD46 and inhibiting viral attachment
PMID: 39570015
4
NECTIN1 is upregulated in hepatocellular carcinoma and stabilizes PVR leading to immune evasion via TIGIT
PMID: 32275969
5
NECTIN1 expression correlates with survival and serves as a prognostic indicator in bladder urothelial carcinoma
PMID: 34625065
Disease Associationsβ“˜22
cleft lip/palate-ectodermal dysplasia syndromeOpen Targets
0.82Strong
Zlotogora-Ogur syndromeOpen Targets
0.80Strong
orofacial cleft 7Open Targets
0.62Moderate
cleft lipOpen Targets
0.48Moderate
ocular hypotensionOpen Targets
0.31Weak
systemic inflammatory response syndromeOpen Targets
0.29Weak
mathematical abilityOpen Targets
0.29Weak
hypertensionOpen Targets
0.26Weak
HeadacheOpen Targets
0.24Weak
Limb painOpen Targets
0.24Weak
Abdominal painOpen Targets
0.23Weak
obesityOpen Targets
0.22Weak
synovium disorderOpen Targets
0.19Weak
genetic disorderOpen Targets
0.18Weak
disorder of patellaOpen Targets
0.13Weak
ShockOpen Targets
0.13Weak
ulcerative colitisOpen Targets
0.12Weak
neoplasmOpen Targets
0.12Weak
melanomaOpen Targets
0.10Weak
Hypoplastic amelogenesis imperfectaOpen Targets
0.10Suggestive
Ectodermal dysplasia, Margarita Island typeUniProt
Non-syndromic orofacial cleft 7UniProt
Pathogenic Variants8
NM_002855.5(NECTIN1):c.1544G>A (p.Trp515Ter)Likely pathogenic
Cleft lip/palate-ectodermal dysplasia syndrome
β˜…β˜†β˜†β˜†2025β†’ Residue 515
NM_002855.5(NECTIN1):c.226C>T (p.Gln76Ter)Likely pathogenic
Cleft lip/palate-ectodermal dysplasia syndrome
β˜…β˜†β˜†β˜†2024β†’ Residue 76
NM_002855.5(NECTIN1):c.283G>T (p.Glu95Ter)Pathogenic
not provided
β˜…β˜†β˜†β˜†2023β†’ Residue 95
NM_002855.5(NECTIN1):c.400C>T (p.Arg134Ter)Pathogenic
Cleft lip/palate-ectodermal dysplasia syndrome
β˜†β˜†β˜†β˜†2022β†’ Residue 134
NM_002855.5(NECTIN1):c.472C>T (p.Arg158Ter)Likely pathogenic
Cleft lip/palate-ectodermal dysplasia syndrome
β˜†β˜†β˜†β˜†2020β†’ Residue 158
NM_002855.5(NECTIN1):c.554G>A (p.Trp185Ter)Pathogenic
Cleft lip/palate-ectodermal dysplasia syndrome|Orofacial cleft 7
β˜†β˜†β˜†β˜†2001β†’ Residue 185
NM_002855.5(NECTIN1):c.969dup (p.Thr324fs)Pathogenic
Cleft lip/palate-ectodermal dysplasia syndrome
β˜†β˜†β˜†β˜†2000β†’ Residue 324
NM_002855.5(NECTIN1):c.556del (p.Glu186fs)Pathogenic
Cleft lip/palate-ectodermal dysplasia syndrome
β˜†β˜†β˜†β˜†2000β†’ Residue 186
View on ClinVar β†—
Related Genes
CTNNB1Protein interaction100%CD226Protein interaction100%TIGITProtein interaction100%CD96Protein interaction100%PVRIGProtein interaction99%CDH5Protein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
51%
Liver
11%
Heart
11%
Lung
6%
Ovary
6%
Gene Interaction Network
Click a node to explore
NECTIN1CTNNB1CD226TIGITCD96PVRIGCDH5
PROTEIN STRUCTURE
Preparing viewer…
PDB3U83 Β· 2.50 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.66LoF Tolerant
pLIβ“˜
0.01Tolerant
Observed/Expected LoF0.46 [0.33–0.66]
RankingsWhere NECTIN1 stands among ~20K protein-coding genes
  • #4,052of 20,598
    Most Researched117 Β· top quartile
  • #3,050of 5,498
    Most Pathogenic Variants8
  • #4,822of 17,882
    Most Constrained (LOEUF)0.66
Genes detectedNECTIN1
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Identification of NECTIN1 as a novel restriction factor for flavivirus infection.
PMID: 39570015
mBio Β· 2024
1.00
2
TMEFF1 is a neuron-specific restriction factor for herpes simplex virus.
PMID: 39048823
Nature Β· 2024
0.90
3
Nectin cell adhesion molecule-4 (NECTIN-4): A potential target for cancer therapy.
PMID: 34547246
Eur J Pharmacol Β· 2021
0.80
4
Alleviated T cell exhaustion and SLC1A3-mediated stroma-remodelling dictate chemoimmunotherapy efficacy in oesophageal squamous cell carcinoma.
PMID: 40983502
Gut Β· 2026
0.70
5
Hepatocellular Carcinoma Cells Up-regulate PVRL1, Stabilizing PVR and Inhibiting the Cytotoxic T-Cell Response via TIGIT to Mediate Tumor Resistance to PD1 Inhibitors in Mice.
PMID: 32275969
Gastroenterology Β· 2020
0.60