HomeAboutRankingsData Sources
© 2026 GeneE
🧬
GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
ⓘGeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
NEIL3
nei like DNA glycosylase 3
Chromosome 4 · 4q34.3
NCBI Gene: 55247Ensembl: ENSG00000109674.5HGNC: HGNC:24573UniProt: Q8TAT5
55PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
DNA Repair
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
base-excision repairsingle strand break repairDNA N-glycosylase activitynucleoplasmhypersensitivity reaction diseasebrain injuryjoint diseaseocular hypotension
✦AI Summary

NEIL3 (nei like DNA glycosylase 3) is a base excision repair enzyme that preferentially recognizes single-stranded DNA (ssDNA) and partially ssDNA structures over double-stranded DNA 1234. The protein functions as a monofunctional DNA glycosylase 4, efficiently removing oxidative lesions including spiroiminodihydantoin (Sp), guanidinohydantoin (Gh), 5-hydroxyuracil, and thymine glycol by cleaving N-glycosyl bonds 345. NEIL3 plays a specialized role in interstrand cross-link (ICL) repair by cleaving one strand of covalently linked lesions without generating double-strand breaks 67. During DNA replication, NEIL3 acts preferentially on damage within single-stranded regions and fork structures, complementing NEIL1's double-stranded DNA activity 5. In neonatal tissues, NEIL3 appears to be the primary enzyme removing Sp and Gh lesions from ssDNA 4. NEIL3 expression is induced by oxidative and inflammatory stress, with regulation potentially involving G-quadruplex formation at its promoter 8. Beyond its canonical DNA repair function, circNEIL3 (a circular RNA) promotes glioma progression by stabilizing the oncogenic protein IGF2BP3 and mediating macrophage immunosuppressive polarization 9, suggesting NEIL3-derived non-coding RNAs may contribute to cancer pathogenesis.

Sources cited
1
NEIL3 prefers single-stranded DNA and partially ssDNA structures; recognizes Sp, Gh, FapyA, FapyG, 5-OHU, 5-OHC, 5-OHMH, Tg and 8-oxoA lesions
PMID: 12433996
2
NEIL3 prefers single-stranded DNA; displays glycosylase activity toward hydantoin lesions and other oxidative bases
PMID: 19170771
3
Purified active NEIL3 proteins exhibit glycosylase/lyase activity on Tg, Sp, and abasic sites in ssDNA and dsDNA
PMID: 22569481
4
NEIL3 glycosylase domain efficiently excises Sp and Gh in ssDNA and dsDNA; operates as monofunctional DNA glycosylase via β-elimination
PMID: 23755964
5
NEIL3 preferentially excises oxidized bases from ssDNA and within open fork structures during DNA replication
PMID: 31018584
6
Human NEIL3 cleaves psoralen-induced ICLs in three- and four-stranded DNA to unhook crosslinks without generating strand breaks
PMID: 29234069
7
NEIL3 participates in interstrand cross-link repair as part of vertebrate DNA repair mechanisms
PMID: 33882259
8
NEIL3 expression is induced by oxidative and inflammatory stress; regulation involves G-quadruplex formation at its promoter through oxidative guanine modification
PMID: 31241930
9
CircNEIL3 promotes glioma progression by stabilizing IGF2BP3 and driving macrophage immunosuppressive polarization via exosomal transmission
PMID: 35031058
Disease Associationsⓘ20
hypersensitivity reaction diseaseOpen Targets
0.37Weak
brain injuryOpen Targets
0.31Weak
joint diseaseOpen Targets
0.30Weak
ocular hypotensionOpen Targets
0.30Weak
heart diseaseOpen Targets
0.26Weak
alcohol drinkingOpen Targets
0.21Weak
multiple sclerosisOpen Targets
0.20Weak
Abruptio PlacentaeOpen Targets
0.19Weak
placenta praeviaOpen Targets
0.19Weak
PhlebitisOpen Targets
0.18Weak
ThrombophlebitisOpen Targets
0.18Weak
Low-frequency hearing lossOpen Targets
0.12Weak
Low-frequency sensorineural hearing impairmentOpen Targets
0.12Weak
hepatocellular carcinomaOpen Targets
0.11Weak
neoplasmOpen Targets
0.11Weak
cancerOpen Targets
0.10Weak
posterior cortical atrophyOpen Targets
0.10Suggestive
lung adenocarcinomaOpen Targets
0.10Suggestive
liver cancerOpen Targets
0.08Suggestive
non-small cell lung carcinomaOpen Targets
0.07Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
FEN1Protein interaction100%TOP2AProtein interaction91%POLQProtein interaction76%KIF4AProtein interaction75%COASYProtein interaction75%DCAKDProtein interaction75%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
28%
Lung
4%
Liver
2%
Ovary
1%
Heart
0%
Gene Interaction Network
Click a node to explore
NEIL3FEN1TOP2APOLQKIF4ACOASYDCAKD
PROTEIN STRUCTURE
Preparing viewer…
PDB7TMY · 2.21 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
1.05LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.81 [0.63–1.05]
RankingsWhere NEIL3 stands among ~20K protein-coding genes
  • #8,228of 20,598
    Most Researched55
  • #10,522of 17,882
    Most Constrained (LOEUF)1.05
Genes detectedNEIL3
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
EWSR1-induced circNEIL3 promotes glioma progression and exosome-mediated macrophage immunosuppressive polarization via stabilizing IGF2BP3.
PMID: 35031058
Mol Cancer · 2022
1.00
2
Human
PMID: 31241930
J Am Chem Soc · 2019
0.90
3
Mechanisms of Vertebrate DNA Interstrand Cross-Link Repair.
PMID: 33882259
Annu Rev Biochem · 2021
0.80
4
Expression and purification of active mouse and human NEIL3 proteins.
PMID: 22569481
Protein Expr Purif · 2012
0.70
5
The Biochemical Role of the Human NEIL1 and NEIL3 DNA Glycosylases on Model DNA Replication Forks.
PMID: 31018584
Genes (Basel) · 2019
0.60