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10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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NEXMIF
neurite extension and migration factor
Chromosome X Β· Xq13.3
NCBI Gene: 340533Ensembl: ENSG00000050030.16HGNC: HGNC:29433UniProt: Q5QGS0
28PubMed Papers
21Diseases
0Drugs
220Pathogenic Variants
FUNCTIONAL ROLE
Highly ConstrainedTranscription Factor
RESEARCH IMPACT
Variant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
nucleoplasmnegative regulation of cell adhesion mediated by integrinnegative regulation of cell-cell adhesion mediated by cadherinnegative regulation of neuron migrationX-linked intellectual disability, Cantagrel typeIntellectual disabilitygenetic disorderSeizure
✦AI Summary

NEXMIF is an X-linked gene involved in neurite outgrowth and neuronal development. While its precise molecular mechanism remains incompletely characterized, NEXMIF likely functions by regulating cell-cell adhesion through the N-cadherin signaling pathway and controlling expression of adhesion-related proteins 1. Loss-of-function variants in NEXMIF cause X-linked developmental and epileptic encephalopathy (DEE), characterized by severe intellectual disability in males and more variable presentations in females 2. Clinical features include developmental delay (99% of patients), seizures (83%), and comorbidities including myoclonic-atonic epilepsy, absence seizures with eyelid myoclonia, autism spectrum disorder, hypotonia, and behavioral abnormalities 23. Males typically present with more severe developmental impairment and language delays, while females more frequently develop refractory epilepsy 23. All pathogenic variants identified to date are loss-of-function mutations (premature stop codons or deleterious structural variants), and the degree of NEXMIF loss correlates with phenotype severity 23. While NEXMIF-associated DEE includes seizure risk, it is not currently associated with sudden unexplained death in epilepsy (SUDEP) unlike some other genetic DEEs 4. Early genetic diagnosis enables appropriate seizure management with antiepileptic drugs.

Sources cited
1
NEXMIF pathogenic variants cause X-linked developmental and epileptic encephalopathy with developmental delay, seizures, autism, and loss-of-function mechanisms
PMID: 33144681
2
NEXMIF is recognized as a recently identified gene associated with X-linked epilepsies and developmental and epileptic encephalopathies
PMID: 38612920
3
NEXMIF mutations cause intellectual disability, epilepsy, behavioral abnormalities, and hypotonia, with males showing more severe intellectual disability and females showing more refractory epilepsy
PMID: 35545418
4
NEXMIF-associated DEE was analyzed for convulsive status epilepticus, nonconvulsive status epilepticus, and SUDEP rates; NEXMIF was not associated with SUDEP in this cohort
PMID: 36750385
5
NEXMIF nonsense variants cause refractory epilepsy with atypical absence status and photosensitivity, with reduced NEXMIF mRNA expression
PMID: 32924309
6
NEXMIF loss-of-function mutations cause infantile spasms with psychomotor retardation and seizures responsive to antiepileptic drugs
PMID: 37313861
7
NEXMIF mutations are associated with intellectual disability, dystonia, motor dysfunction, visual impairment, and seizures in infants
PMID: 39129698
8
NEXMIF is identified as a pathogenic gene for syndromic intellectual disability in neurodevelopmental disorders
PMID: 38114583
Disease Associationsβ“˜21
X-linked intellectual disability, Cantagrel typeOpen Targets
0.81Strong
Intellectual disabilityOpen Targets
0.51Moderate
genetic disorderOpen Targets
0.50Moderate
SeizureOpen Targets
0.45Moderate
epilepsy with myoclonic atonic seizuresOpen Targets
0.37Weak
X-linked complex neurodevelopmental disorderOpen Targets
0.37Weak
Neurodevelopmental disorderOpen Targets
0.27Weak
developmental and epileptic encephalopathyOpen Targets
0.09Suggestive
azoospermiaOpen Targets
0.09Suggestive
Male infertility with spermatogenesis disorder due to single gene mutationOpen Targets
0.07Suggestive
Female infertility due to fertilization defectOpen Targets
0.07Suggestive
Rare genetic female infertilityOpen Targets
0.07Suggestive
partial chromosome Y deletionOpen Targets
0.07Suggestive
spermatogenic failure 3Open Targets
0.06Suggestive
spermatogenic failure 55Open Targets
0.06Suggestive
spermatogenic failure 26Open Targets
0.06Suggestive
spermatogenic failure 31Open Targets
0.06Suggestive
spermatogenic failure 53Open Targets
0.06Suggestive
spermatogenic failure 87Open Targets
0.06Suggestive
habitual abortionOpen Targets
0.06Suggestive
Intellectual developmental disorder, X-linked 98UniProt
Pathogenic Variants220
NM_001008537.3(NEXMIF):c.1771A>T (p.Lys591Ter)Likely pathogenic
Neurodevelopmental disorder|X-linked intellectual disability, Cantagrel type
β˜…β˜…β˜†β˜†2026β†’ Residue 591
NM_001008537.3(NEXMIF):c.766C>T (p.Gln256Ter)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 256
NM_001008537.3(NEXMIF):c.1882C>T (p.Arg628Ter)Pathogenic
X-linked intellectual disability, Cantagrel type|not provided|Inborn genetic diseases|Seizure
β˜…β˜…β˜†β˜†2025β†’ Residue 628
NM_001008537.3(NEXMIF):c.1131dup (p.Lys378Ter)Pathogenic
X-linked intellectual disability, Cantagrel type|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 378
NM_001008537.3(NEXMIF):c.652C>T (p.Arg218Ter)Pathogenic
not provided|Continuous spike and waves during slow sleep|X-linked intellectual disability, Cantagrel type|not specified
β˜…β˜…β˜†β˜†2025β†’ Residue 218
NM_001008537.3(NEXMIF):c.1582del (p.Arg528fs)Pathogenic
X-linked intellectual disability, Cantagrel type|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 528
NM_001008537.3(NEXMIF):c.846_849del (p.Val283fs)Pathogenic
not provided|X-linked intellectual disability, Cantagrel type
β˜…β˜…β˜†β˜†2025β†’ Residue 283
NM_001008537.3(NEXMIF):c.1042C>T (p.Arg348Ter)Pathogenic
not provided|X-linked intellectual disability, Cantagrel type
β˜…β˜…β˜†β˜†2025β†’ Residue 348
NM_001008537.3(NEXMIF):c.937C>T (p.Arg313Ter)Pathogenic
not provided|X-linked intellectual disability, Cantagrel type
β˜…β˜…β˜†β˜†2025β†’ Residue 313
NM_001008537.3(NEXMIF):c.1569G>A (p.Trp523Ter)Pathogenic
not provided|X-linked intellectual disability, Cantagrel type
β˜…β˜…β˜†β˜†2025β†’ Residue 523
NM_001008537.3(NEXMIF):c.2518del (p.Gln840fs)Pathogenic
not provided|not specified
β˜…β˜…β˜†β˜†2024β†’ Residue 840
NM_001008537.3(NEXMIF):c.791_792del (p.Phe264fs)Likely pathogenic
X-linked intellectual disability, Cantagrel type|Intellectual disability
β˜…β˜…β˜†β˜†2024β†’ Residue 264
NM_001008537.3(NEXMIF):c.3142G>T (p.Glu1048Ter)Pathogenic
not provided|Seizure
β˜…β˜…β˜†β˜†2024β†’ Residue 1048
NM_001008537.3(NEXMIF):c.3597dup (p.Ser1200fs)Pathogenic
X-linked intellectual disability, Cantagrel type|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 1200
NM_001008537.3(NEXMIF):c.1123dup (p.Glu375fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 375
NM_001008537.3(NEXMIF):c.1441C>T (p.Arg481Ter)Pathogenic
not provided|X-linked intellectual disability, Cantagrel type|not specified
β˜…β˜…β˜†β˜†2024β†’ Residue 481
NM_001008537.3(NEXMIF):c.3458dup (p.Asn1153fs)Pathogenic
not provided|X-linked intellectual disability, Cantagrel type|not specified
β˜…β˜…β˜†β˜†2023β†’ Residue 1153
NM_001008537.3(NEXMIF):c.2888_2889del (p.Ser963fs)Pathogenic
X-linked intellectual disability, Cantagrel type|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 963
NM_001008537.3(NEXMIF):c.422del (p.Gln141fs)Pathogenic
not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 141
NM_001008537.3(NEXMIF):c.964C>T (p.Arg322Ter)Pathogenic
X-linked intellectual disability, Cantagrel type|not provided
β˜…β˜…β˜†β˜†2023β†’ Residue 322
View on ClinVar β†—
Related Genes
P2RY8Protein interaction85%RLIMProtein interaction77%AJAP1Shared pathway20%PCDH19Co-mentioned in literature20%PLET1Shared pathway17%MUC1Shared pathway14%
Tissue Expression6 tissues
Brain
100%
Ovary
13%
Bone Marrow
3%
Lung
2%
Heart
2%
Liver
1%
Gene Interaction Network
Click a node to explore
NEXMIFP2RY8RLIMAJAP1PCDH19PLET1MUC1
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt Q5QGS0
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
0.23Highly Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.13 [0.08–0.23]
RankingsWhere NEXMIF stands among ~20K protein-coding genes
  • #12,398of 20,598
    Most Researched28
  • #300of 5,498
    Most Pathogenic Variants220 Β· top 10%
  • #647of 17,882
    Most Constrained (LOEUF)0.23 Β· top 5%
Genes detectedNEXMIF
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
X-Linked Epilepsies: A Narrative Review.
PMID: 38612920
Int J Mol Sci Β· 2024
1.00
2
NEXMIF encephalopathy: an X-linked disorder with male and female phenotypic patterns.
PMID: 33144681
Genet Med Β· 2021
0.90
3
Rates of Status Epilepticus and Sudden Unexplained Death in Epilepsy in People With Genetic Developmental and Epileptic Encephalopathies.
PMID: 36750385
Neurology Β· 2023
0.80
4
De novo variants underlying monogenic syndromes with intellectual disability in a neurodevelopmental cohort from India.
PMID: 38114583
Eur J Hum Genet Β· 2024
0.70
5
Infantile spasms caused by
PMID: 37313861
Appl Neuropsychol Child Β· 2023
0.60