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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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NFYA
nuclear transcription factor Y subunit alpha
Chromosome 6 · 6p21.1
NCBI Gene: 4800Ensembl: ENSG00000001167.16HGNC: HGNC:7804UniProt: P23511
148PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Transcription Factor
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
nucleoplasmprotein-DNA complexDNA-binding transcription activator activity, RNA polymerase II-specificpositive regulation of transcription by RNA polymerase IIneurodegenerative diseaseneoplasmposterior cortical atrophytriple-negative breast cancer
✦AI Summary

NFYA (nuclear transcription factor Y subunit alpha) is a key component of the heterotrimeric NF-Y transcription factor complex that specifically binds to CCAAT box motifs in gene promoters 1. NFYA functions as both a transcriptional activator and repressor depending on cofactor interactions, regulating diverse cellular processes including cell cycle progression, metabolism, and stem cell maintenance. The protein exists in two main splice variants: NFYA-L (long) and NFYA-S (short), which differ in exon 3 inclusion and have distinct functional roles 2. Mechanistically, NFYA binding to target promoters can be regulated by DNA methylation status, with decreased methylation enhancing NFYA binding and subsequent gene transcription 3. NFYA expression is itself regulated by various signaling pathways, including reactive oxygen species-mediated miR-193b targeting under metabolic stress conditions 4. Disease relevance includes roles in cancer progression, where NFYA promotes cell proliferation and metabolic reprogramming 1, and in cardiovascular disease, where NFYA downregulation contributes to pulmonary hypertension through reduced soluble guanylate cyclase expression 4. In acute myeloid leukemia, NFYA splice variant ratios serve as prognostic biomarkers, with NFYA-S predominance associated with better chemotherapy outcomes 2. NFYA also maintains hematopoietic stem cell functionality through kinase-independent interactions 5.

Sources cited
1
NFYA is part of heterotrimeric NF-Y complex binding CCAAT motifs and regulates cell cycle/metabolic genes
PMID: 33764154
2
NFYA has two main splice variants (NFYA-L and NFYA-S) with prognostic value in acute myeloid leukemia
PMID: 39192759
3
NFYA binding to promoters is regulated by DNA methylation status
PMID: 39462342
4
NFYA is downregulated by ROS-miR-193b pathway under metabolic stress, contributing to pulmonary hypertension
PMID: 34157861
5
NFYA interacts with CDK6 to maintain hematopoietic stem cell functionality
PMID: 38684032
6
NFYA expression is increased by HMGB1 under hypoxic conditions in cancer cells
PMID: 38378644
Disease Associationsⓘ20
neurodegenerative diseaseOpen Targets
0.33Weak
neoplasmOpen Targets
0.09Suggestive
posterior cortical atrophyOpen Targets
0.08Suggestive
triple-negative breast cancerOpen Targets
0.08Suggestive
cervical cancerOpen Targets
0.08Suggestive
gastric cancerOpen Targets
0.07Suggestive
osteosarcomaOpen Targets
0.07Suggestive
Left bundle branch blockOpen Targets
0.06Suggestive
esophageal carcinomaOpen Targets
0.06Suggestive
non-small cell lung carcinomaOpen Targets
0.06Suggestive
hepatocellular carcinomaOpen Targets
0.05Suggestive
endometrial cancerOpen Targets
0.05Suggestive
late-onset Alzheimers diseaseOpen Targets
0.05Suggestive
essential thrombocythemiaOpen Targets
0.05Suggestive
cancerOpen Targets
0.05Suggestive
cystOpen Targets
0.05Suggestive
hypertrophic cardiomyopathyOpen Targets
0.05Suggestive
prostate cancerOpen Targets
0.05Suggestive
deep vein thrombosisOpen Targets
0.04Suggestive
dementiaOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
MNTShared pathway100%NFICShared pathway100%NFIXShared pathway100%GLIS3Shared pathway100%CCDC124Shared pathway100%ZNF768Shared pathway100%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
52%
Brain
50%
Lung
39%
Liver
36%
Heart
31%
Gene Interaction Network
Click a node to explore
NFYAMNTNFICNFIXGLIS3CCDC124ZNF768
PROTEIN STRUCTURE
Preparing viewer…
PDB8QU4 · 1.38 Å · X-ray
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.68LoF Tolerant
pLIⓘ
0.01Tolerant
Observed/Expected LoF0.48 [0.34–0.68]
RankingsWhere NFYA stands among ~20K protein-coding genes
  • #3,069of 20,598
    Most Researched148 · top quartile
  • #5,058of 17,882
    Most Constrained (LOEUF)0.68
Genes detectedNFYA
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
ALDH1A3 Coordinates Metabolism With Gene Regulation in Pulmonary Arterial Hypertension.
PMID: 33764154
Circulation · 2021
1.00
2
ALDH2 mediates the effects of sodium-glucose cotransporter 2 inhibitors (SGLT2i) on improving cardiac remodeling.
PMID: 39462342
Cardiovasc Diabetol · 2024
0.90
3
HMGB1 promotes mitochondrial transfer between hepatocellular carcinoma cells through RHOT1 and RAC1 under hypoxia.
PMID: 38378644
Cell Death Dis · 2024
0.80
4
Metabolic Syndrome Mediates ROS-miR-193b-NFYA-Dependent Downregulation of Soluble Guanylate Cyclase and Contributes to Exercise-Induced Pulmonary Hypertension in Heart Failure With Preserved Ejection Fraction.
PMID: 34157861
Circulation · 2021
0.70
5
SSEA3 and Sialyl Lewis a Glycan Expression Is Controlled by B3GALT5 LTR through Lamin A-NFYA and SIRT1-STAT3 Signaling in Human ES Cells.
PMID: 31936807
Cells · 2020
0.60