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8 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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NICN1
nicolin 1, tubulin polyglutamylase complex subunit
Chromosome 3 · 3p21.31
NCBI Gene: 84276Ensembl: ENSG00000145029.16HGNC: HGNC:18317UniProt: Q9BSH3
17PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
protein bindingnucleoplasmmicrotubulenucleusglycine encephalopathyglycine encephalopathy 1Neurodevelopmental delaylysosomal storage disease
✦AI Summary

NICN1 (nicolin 1, tubulin polyglutamylase complex subunit) is a mammalian-specific nuclear protein of 213 amino acids that does not belong to any known protein family 1. It localizes to the nucleoplasm and exhibits tissue-specific expression patterns, with highest levels in brain, testis, liver, and kidney 1. NICN1 functions as a host factor promoting HIV-1 latency; its downregulation significantly enhances HIV-1 gene expression in CD4+ T cells by stimulating RNA Polymerase II-mediated transcription 2. Recent CRISPR screening identified NICN1 among novel host factors associated with HIV-1 latency maintenance 3. Beyond virology, NICN1 expression correlates with the tumor suppressor FHIT in both lung adenocarcinoma and squamous cell carcinoma, suggesting potential involvement in cancer-related pathways 4. Genetic association studies link NICN1 to sedentary behavior-related obesity risk, with eQTL analysis revealing its involvement in hormonal and metabolic pathways including cortisol synthesis, thyroid hormone synthesis, and insulin secretion in adipose tissues 5. NICN1 is positioned immediately upstream of the aminomethyltransferase gene in the genome 6.

Sources cited
1
NICN1 is a mammalian-specific 213 amino acid nuclear protein with tissue-specific expression, highest in brain, testis, liver, and kidney
PMID: 12392556
2
NICN1 is a host factor promoting HIV-1 latency; its downregulation enhances HIV-1 expression by stimulating RNA Polymerase II transcription
PMID: 33270809
3
NICN1 identified as a novel host factor associated with HIV-1 latency through CRISPR screening
PMID: 40497153
4
NICN1 expression strongly correlates with FHIT in lung adenocarcinoma and squamous cell carcinoma
PMID: 35254116
5
NICN1 genetically associated with sedentary behavior and obesity risk; involved in cortisol synthesis, thyroid hormone synthesis, and insulin secretion pathways in adipose tissues
PMID: 38457382
6
NICN1 gene is positioned immediately upstream of the aminomethyltransferase gene in the genome
PMID: 12487019
Disease Associationsⓘ20
glycine encephalopathyOpen Targets
0.56Moderate
glycine encephalopathy 1Open Targets
0.50Moderate
Neurodevelopmental delayOpen Targets
0.34Weak
Alzheimer diseaseOpen Targets
0.30Weak
lysosomal storage diseaseOpen Targets
0.30Weak
multiple sclerosisOpen Targets
0.30Weak
neurodegenerative diseaseOpen Targets
0.30Weak
Parkinson diseaseOpen Targets
0.30Weak
inflammatory bowel diseaseOpen Targets
0.27Weak
genetic disorderOpen Targets
0.17Weak
Abnormality of the skeletal systemOpen Targets
0.15Weak
opioid use disorderOpen Targets
0.13Weak
substance-related disorderOpen Targets
0.04Suggestive
nicotine dependenceOpen Targets
0.04Suggestive
intelligenceOpen Targets
0.04Suggestive
smoking initiationOpen Targets
0.04Suggestive
smoking cessationOpen Targets
0.04Suggestive
Crohn's diseaseOpen Targets
0.03Suggestive
major depressive disorderOpen Targets
0.02Suggestive
mood disorderOpen Targets
0.02Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
TMEM178ACo-mentioned in literature100%TPGS2Protein interaction98%TPGS1Protein interaction97%TTLL1Protein interaction83%LRRC49Protein interaction83%TBC1D19Protein interaction83%
Tissue Expression6 tissues
Ovary
100%
Liver
59%
Lung
55%
Brain
39%
Bone Marrow
0%
Heart
0%
Gene Interaction Network
Click a node to explore
NICN1TMEM178ATPGS2TPGS1TTLL1LRRC49TBC1D19
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted · UniProt Q9BSH3
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.03LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.68 [0.46–1.03]
RankingsWhere NICN1 stands among ~20K protein-coding genes
  • #15,071of 20,598
    Most Researched17
  • #10,265of 17,882
    Most Constrained (LOEUF)1.03
Genes detectedNICN1
Sources retrieved8 papers
Response time—
📄 Sources
8▼
1
HIV-1 latency: From acquaintance to confidant.
PMID: 40497153
J Virus Erad · 2025
1.00
2
Cloning and characterization of the mammalian-specific nicolin 1 gene (NICN1) encoding a nuclear 24 kDa protein.
PMID: 12392556
Eur J Biochem · 2002
0.88
3
Toward understanding the genetics of alcohol drinking through transcriptome meta-analysis.
PMID: 16618939
Proc Natl Acad Sci U S A · 2006
0.75
4
System analysis of
PMID: 35254116
Int J Biol Markers · 2022
0.63
5
Identification of unrecognized host factors promoting HIV-1 latency.
PMID: 33270809
PLoS Pathog · 2020
0.50