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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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NLGN2
neuroligin 2
Chromosome 17 · 17p13.1
NCBI Gene: 57555Ensembl: ENSG00000169992.10HGNC: HGNC:14290UniProt: Q8NFZ4
40PubMed Papers
0Diseases
0Drugs
1Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
positive regulation of insulin secretionplasma membraneprotein bindingpositive regulation of protein localization to synapse
✦AI Summary

NLGN2 is a transmembrane cell-adhesion molecule that serves as a central organizer of inhibitory GABAergic synapses 1. It functions exclusively at inhibitory synapses, unlike its paralog NLGN1 which operates at excitatory synapses, with this specificity determined by extracellular domains 2. NLGN2 recruits and clusters postsynaptic proteins including GABRG2 and gephyrin through transsynaptic interactions with presynaptic neurexins, thereby regulating signal amplitude from inhibitory synapses and modulating the excitatory/inhibitory balance critical for information processing 1. It also promotes initial synapse formation and may facilitate de novo presynaptic structure development. Beyond neurons, NLGN2 mediates cell-cell interactions in pancreatic beta cells and modulates insulin secretion. Dysregulation of NLGN2 is implicated in multiple neurodevelopmental and psychiatric disorders. Rare mutations including R215H cause loss-of-function deficits in GABAergic synaptogenesis through endoplasmic reticulum retention and impaired membrane trafficking in schizophrenia 3. NLGN2 was identified as a high-confidence neurodevelopmental disorder candidate gene 4 and a potential therapeutic target for migraine 5. Its altered expression in the prefrontal cortex associates with memory consolidation processes 6, and structural variants implicate NLGN2 in autism spectrum disorders 7.

Sources cited
1
NLGN2 is a central organizer of inhibitory GABAergic synapses, recruits postsynaptic proteins, and regulates signal amplitude; altered expression linked to schizophrenia, autism, and anxiety
PMID: 33443230
2
NLGN2 functions selectively at inhibitory synapses with extracellular domains conferring synapse specificity; distinct intracellular mechanisms from NLGN1
PMID: 39747663
3
Rare NLGN2 mutations (R215H, R621H) cause loss-of-function in GABAergic synaptogenesis through endoplasmic reticulum retention; associated with schizophrenia
PMID: 21551456
4
NLGN2 identified as high-confidence neurodevelopmental disorder gene (>90% true-positive probability) through de novo variant analysis
PMID: 35468861
5
NLGN2 identified as druggable therapeutic target for migraine through genome-wide Mendelian randomization
PMID: 38867170
6
NLGN2 expression changes in prefrontal cortex inhibitory neurons modulate memory consolidation and strengthening
PMID: 29278843
7
NLGN2 structural variants implicated in autism spectrum disorders development; distinct assembly mechanisms from NLGN3
PMID: 36479216
Pathogenic Variants1
NM_020795.4(NLGN2):c.1517A>G (p.Tyr506Cys)Likely pathogenic
not provided
★☆☆☆2025→ Residue 506
View on ClinVar ↗
Related Genes
DLG2Protein interaction100%DLG3Protein interaction100%SHBGProtein interaction100%CASKProtein interaction100%DLGAP2Protein interaction100%DLGAP1Protein interaction100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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NLGN2DLG2DLG3SHBGCASKDLGAP2DLGAP1
PROTEIN STRUCTURE
Preparing viewer…
PDB9FAJ · 2.60 Å · EM
View on RCSB ↗
Constraintⓘ
LOEUFⓘ
0.40Moderately Constrained
pLIⓘ
1.00Intolerant
Observed/Expected LoF0.25 [0.16–0.40]
RankingsWhere NLGN2 stands among ~20K protein-coding genes
  • #10,217of 20,598
    Most Researched40
  • #5,173of 5,498
    Most Pathogenic Variants1
  • #2,019of 17,882
    Most Constrained (LOEUF)0.40 · top quartile
Genes detectedNLGN2
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
NLGN1 and NLGN2 in the prefrontal cortex: their role in memory consolidation and strengthening.
PMID: 29278843
Curr Opin Neurobiol · 2018
1.00
2
Identifying therapeutic target genes for migraine by systematic druggable genome-wide Mendelian randomization.
PMID: 38867170
J Headache Pain · 2024
0.90
3
Large-scale discovery of novel neurodevelopmental disorder-related genes through a unified analysis of single-nucleotide and copy number variants.
PMID: 35468861
Genome Med · 2022
0.80
4
Identification and functional characterization of rare mutations of the neuroligin-2 gene (NLGN2) associated with schizophrenia.
PMID: 21551456
Hum Mol Genet · 2011
0.70
5
Expression and structural analysis of human neuroligin 2 and neuroligin 3 implicated in autism spectrum disorders.
PMID: 36479216
Front Endocrinol (Lausanne) · 2022
0.60