HomeAboutRankingsData Sources
Β© 2026 GeneE
🧬
GeneE
25 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
NPHS1
NPHS1 adhesion molecule, nephrin
Chromosome 19 Β· 19q13.12
NCBI Gene: 4868Ensembl: ENSG00000161270.21HGNC: HGNC:7908UniProt: O60500
162PubMed Papers
21Diseases
0Drugs
469Pathogenic Variants
RESEARCH IMPACT
TrendingVariant-Rich
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
protein bindingmyosin bindingglomerular basement membrane developmentprotein localization to synapsecongenital nephrotic syndrome, Finnish typenephrotic syndromeDental enamel hypoplasiatooth agenesis
✦AI Summary

NPHS1 encodes nephrin, a critical cell adhesion molecule essential for glomerular filtration barrier integrity. Nephrin localizes to the podocyte slit diaphragm and anchors this structure to the actin cytoskeleton, regulating glomerular vascular permeability 1. Loss or dysfunction of nephrin architecture directly causes nephrotic syndrome through failure of the filtration barrier 2. Nephrin dysfunction contributes to nephrotic syndrome through multiple mechanisms. Genetic mutations in NPHS1 cause congenital and early-onset steroid-resistant nephrotic syndrome in children, with homozygous mutations demonstrating high penetrance 3. Additionally, circulating autoantibodies targeting nephrin have been identified in minimal change disease and post-transplant focal segmental glomerulosclerosis, where they induce nephrin phosphorylation and altered slit diaphragm localization, suggesting an autoimmune disease mechanism 24. Common NPHS1 genetic variants (rs437168) are associated with increased nephrotic syndrome susceptibility in pediatric populations and early-onset pre-eclampsia, likely through compromised glomerular function 56. Clinically, NPHS1 mutations account for severe childhood-onset nephrotic syndrome with progression to end-stage renal disease, while anti-nephrin antibodies represent emerging therapeutic targets for antibody-mediated disease subtypes, enabling precision medicine approaches in nephrotic syndrome management.

Sources cited
1
Nephrin autoantibodies present in minimal change disease patients and correlate with slit diaphragm dysfunction and proteinuria
PMID: 34732507
2
NPHS1 rs437168 C allele associated with pre-eclampsia risk, particularly early-onset disease
PMID: 34555552
3
Anti-nephrin antibodies mediate post-transplant FSGS recurrence through nephrin phosphorylation and altered localization
PMID: 38110152
4
NPHS1 rs437168 GA and AA genotypes significantly increase nephrotic syndrome risk in children
PMID: 25599733
5
NPHS1 mutations cause abnormal slit diaphragm signaling and podocyte injury in kidney organoids
PMID: 35417019
6
NPHS1 homozygous mutations found in 22% of early-onset and congenital nephrotic syndrome cases
PMID: 22565185
7
NPHS1 mutations responsible for congenital and severe nephrotic syndrome progressing to end-stage renal failure
PMID: 15503167
Disease Associationsβ“˜21
congenital nephrotic syndrome, Finnish typeOpen Targets
0.86Strong
nephrotic syndromeOpen Targets
0.69Moderate
Dental enamel hypoplasiaOpen Targets
0.54Moderate
tooth agenesisOpen Targets
0.51Moderate
focal segmental glomerulosclerosisOpen Targets
0.49Moderate
familial nephrotic syndromeOpen Targets
0.47Moderate
genetic disorderOpen Targets
0.47Moderate
glomerulonephritisOpen Targets
0.43Moderate
dental cariesOpen Targets
0.42Moderate
renal dialysisOpen Targets
0.42Moderate
familial idiopathic steroid-resistant nephrotic syndromeOpen Targets
0.41Moderate
kidney failureOpen Targets
0.38Weak
kidney diseaseOpen Targets
0.37Weak
steroid-resistant nephrotic syndromeOpen Targets
0.26Weak
Nephrotic range proteinuriaOpen Targets
0.26Weak
Congenital and infantile nephrotic syndromeOpen Targets
0.26Weak
gingival diseaseOpen Targets
0.25Weak
glomerular diseaseOpen Targets
0.25Weak
tooth diseaseOpen Targets
0.23Weak
secondary hypertensionOpen Targets
0.22Weak
Nephrotic syndrome 1UniProt
Pathogenic Variants469
NM_004646.4(NPHS1):c.3325C>T (p.Arg1109Ter)Pathogenic
Finnish congenital nephrotic syndrome|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 1109
NM_004646.4(NPHS1):c.2606_2607dup (p.Asn870fs)Pathogenic
Finnish congenital nephrotic syndrome|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 870
NM_004646.4(NPHS1):c.2335-1G>APathogenic
Finnish congenital nephrotic syndrome|not provided
β˜…β˜…β˜†β˜†2026
NM_004646.4(NPHS1):c.1701C>A (p.Cys567Ter)Pathogenic
Finnish congenital nephrotic syndrome|not provided|Infantile Nephrotic syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 567
NM_004646.4(NPHS1):c.3061dup (p.Asp1021fs)Pathogenic
Finnish congenital nephrotic syndrome|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 1021
NM_004646.4(NPHS1):c.139del (p.Ala47fs)Pathogenic
Finnish congenital nephrotic syndrome|not provided|Nephrotic syndrome|Infantile Nephrotic syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 47
NM_004646.4(NPHS1):c.3549C>A (p.Tyr1183Ter)Pathogenic
Finnish congenital nephrotic syndrome|not provided|Kidney disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 1183
NM_004646.4(NPHS1):c.2491C>T (p.Arg831Cys)Pathogenic
Finnish congenital nephrotic syndrome|not provided|NPHS1-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 831
NM_004646.3(NPHS1):c.1758-8_1785delPathogenic
Finnish congenital nephrotic syndrome|not provided
β˜…β˜…β˜†β˜†2026
NM_004646.4(NPHS1):c.3442C>T (p.Gln1148Ter)Pathogenic
Finnish congenital nephrotic syndrome|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 1148
NM_004646.4(NPHS1):c.619del (p.Arg207fs)Pathogenic
Finnish congenital nephrotic syndrome|Nephrotic syndrome|not provided|NPHS1-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 207
NM_004646.4(NPHS1):c.1048T>C (p.Ser350Pro)Pathogenic
Finnish congenital nephrotic syndrome|not provided|Nephrotic syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 350
NM_004646.4(NPHS1):c.1868G>T (p.Cys623Phe)Pathogenic
Finnish congenital nephrotic syndrome|not provided|Nephrotic syndrome|NPHS1-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 623
NM_004646.4(NPHS1):c.2479C>T (p.Arg827Ter)Pathogenic
Finnish congenital nephrotic syndrome|not provided
β˜…β˜…β˜†β˜†2026β†’ Residue 827
NM_004646.4(NPHS1):c.1117C>T (p.Arg373Ter)Pathogenic
not provided|Finnish congenital nephrotic syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 373
NM_004646.4(NPHS1):c.3250dup (p.Val1084fs)Pathogenic
Finnish congenital nephrotic syndrome|not provided|Nephrotic syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 1084
NM_004646.4(NPHS1):c.3335del (p.Asn1112fs)Pathogenic
not provided|Finnish congenital nephrotic syndrome
β˜…β˜…β˜†β˜†2026β†’ Residue 1112
NM_004646.4(NPHS1):c.2882G>A (p.Trp961Ter)Likely pathogenic
Finnish congenital nephrotic syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 961
NM_004646.4(NPHS1):c.3213del (p.Leu1072fs)Pathogenic
not provided|Inborn genetic diseases|Finnish congenital nephrotic syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 1072
NM_004646.4(NPHS1):c.847C>T (p.Gln283Ter)Pathogenic
not provided|Finnish congenital nephrotic syndrome
β˜…β˜…β˜†β˜†2025β†’ Residue 283
View on ClinVar β†—
Related Genes
FAT1Protein interaction100%GRB2Protein interaction100%ACTN4Protein interaction99%NCK1Protein interaction99%WASLProtein interaction99%CDH3Protein interaction99%
Tissue Expression6 tissues
Ovary
100%
Brain
100%
Liver
89%
Lung
72%
Heart
0%
Bone Marrow
0%
Gene Interaction Network
Click a node to explore
NPHS1FAT1GRB2ACTN4NCK1WASLCDH3
PROTEIN STRUCTURE
Preparing viewer…
PDB4ZRT Β· 1.74 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.87LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF0.74 [0.63–0.87]
RankingsWhere NPHS1 stands among ~20K protein-coding genes
  • #2,773of 20,598
    Most Researched162 Β· top quartile
  • #114of 5,498
    Most Pathogenic Variants469 Β· top 5%
  • #7,676of 17,882
    Most Constrained (LOEUF)0.87
Genes detectedNPHS1
Sources retrieved25 papers
Response timeβ€”
πŸ“„ Sources
25β–Ό
1
Discovery of Autoantibodies Targeting Nephrin in Minimal Change Disease Supports a Novel Autoimmune Etiology.
PMID: 34732507
J Am Soc Nephrol Β· 2022
1.00
2
[Steroid-resistant nephrotic syndrome and NPHS1 gene].
PMID: 22336312
Zhonghua Er Ke Za Zhi Β· 2011
0.90
3
The association of NPHS1 and ACNT4 gene polymorphisms with pre-eclampsia.
PMID: 34555552
Eur J Obstet Gynecol Reprod Biol Β· 2021
0.80
4
A multi-institutional study found a possible role of anti-nephrin antibodies in post-transplant focalΒ segmental glomerulosclerosis recurrence.
PMID: 38110152
Kidney Int Β· 2024
0.70
5
Ocular manifestations of the genetic causes of focal and segmental glomerulosclerosis.
PMID: 37578539
Pediatr Nephrol Β· 2024
0.64