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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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OC90
otoconin 90
Chromosome 8 · 8q24.22
NCBI Gene: 729330Ensembl: ENSG00000253117.5HGNC: HGNC:8100UniProt: Q02509
9PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
otolith mineralizationphosphatidylcholine metabolic processphosphatidylglycerol metabolic processcalcium ion bindingtype 1 diabetes nephropathyaneurysmautosomal dominant nonsyndromic hearing lossdeafness
✦AI Summary

OC90 (otoconin 90) is the major protein component of otoconia, calcium carbonate biominerals essential for gravity sensing and balance in the vestibular system 1. The protein contains two domains homologous to secretory phospholipase A2 and is specifically expressed in the developing otocyst 1. OC90 functions as a scaffold for otoconia biomineralization by sequestering calcium and facilitating crystal nucleation while inhibiting crystal growth in a concentration-dependent manner 2. It induces morphological changes characteristic of native otoconia and modulates calcite crystal growth through formation of anionic surface clusters upon protein folding 2. OC90 works cooperatively with other otoconial proteins like NOX3, with double transfectants showing enhanced calcification compared to single protein expression 3. The protein's expression is regulated by estrogen receptors and vitamin D receptor (VDR), with downregulation associated with otolith shedding and benign paroxysmal positional vertigo (BPPV) 45. While OC90 levels show some elevation in BPPV patients, otolin-1 demonstrates stronger diagnostic potential as a biomarker 6. Interestingly, ectopic OC90 expression has been identified in aggressive cancers like triple-negative breast cancer, where it promotes metastatic functions 7.

Sources cited
1
OC90 is the major protein component of otoconia and contains two domains homologous to secretory phospholipase A2, specifically expressed in developing otocyst
PMID: 9860971
2
OC90 facilitates nucleation and inhibits crystal growth in concentration-dependent manner, induces otoconia-like morphological changes through anionic surface clusters
PMID: 20595020
3
OC90 works cooperatively with NOX3, showing enhanced calcification in double transfectants
PMID: 33554930
4
OC90 expression is regulated by estrogen receptors, with downregulation associated with otolith shedding
PMID: 34403090
5
VDR downregulation in BPPV patients is associated with decreased OC90 expression
PMID: 34165161
6
OC90 shows some elevation in BPPV patients but otolin-1 has stronger diagnostic potential
PMID: 39456211
7
Ectopic OC90 expression in triple-negative breast cancer promotes metastatic functions
PMID: 30763339
Disease Associationsⓘ20
type 1 diabetes nephropathyOpen Targets
0.33Weak
aneurysmOpen Targets
0.29Weak
autosomal dominant nonsyndromic hearing lossOpen Targets
0.07Suggestive
deafnessOpen Targets
0.07Suggestive
hearing loss, autosomal recessiveOpen Targets
0.06Suggestive
hearing loss, autosomal dominant 87Open Targets
0.06Suggestive
hearing loss, autosomal dominant 85Open Targets
0.06Suggestive
hearing loss, autosomal dominant 75Open Targets
0.06Suggestive
X-linked nonsyndromic hearing lossOpen Targets
0.06Suggestive
triple-negative breast cancerOpen Targets
0.06Suggestive
hearing loss, autosomal dominant 80Open Targets
0.06Suggestive
hearing loss, autosomal dominant 86Open Targets
0.05Suggestive
hearing loss, autosomal dominant 77Open Targets
0.05Suggestive
autosomal recessive nonsyndromic hearing loss 4Open Targets
0.05Suggestive
hearing loss, autosomal recessive 118, with cochlear aplasiaOpen Targets
0.05Suggestive
Autosomal recessive cerebellar ataxia - blindness - deafnessOpen Targets
0.05Suggestive
peroxisome biogenesis disorder 4BOpen Targets
0.05Suggestive
Cochleosaccular degeneration - cataractOpen Targets
0.04Suggestive
cochleosaccular degeneration-cataract syndromeOpen Targets
0.04Suggestive
X-linked mixed hearing loss with perilymphatic gusherOpen Targets
0.04Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PLA2G2CShared pathway100%HHLA1Protein interaction97%OTOP1Protein interaction90%PLA2G2EShared pathway83%OTOL1Protein interaction82%ATP2B2Protein interaction79%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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OC90PLA2G2CHHLA1OTOP1PLA2G2EOTOL1ATP2B2
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q02509
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.27LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.96 [0.74–1.27]
RankingsWhere OC90 stands among ~20K protein-coding genes
  • #17,394of 20,598
    Most Researched9
  • #13,435of 17,882
    Most Constrained (LOEUF)1.27
Genes detectedOC90
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Molecular Mediators of Estrogen Reduction-induced Otolith Shedding.
PMID: 34403090
Curr Med Sci · 2021
1.00
2
Zebrafish otolith biomineralization requires polyketide synthase.
PMID: 30974150
Mech Dev · 2019
0.90
3
Downregulation of VDR in benign paroxysmal positional vertigo patients inhibits otolith‑associated protein expression levels.
PMID: 34165161
Mol Med Rep · 2021
0.80
4
Serum Otoconin-90 and Otolin-1 Concentrations in Benign Paroxysmal Positional Vertigo.
PMID: 39456211
Biomolecules · 2024
0.70
5
Ectopic Otoconin 90 expression in triple negative breast cancer cell lines is associated with metastasis functions.
PMID: 30763339
PLoS One · 2019
0.60