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GeneE
26 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
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PABPN1
poly(A) binding protein nuclear 1
Chromosome 14 Β· 14q11.2
NCBI Gene: 8106Ensembl: ENSG00000100836.11HGNC: HGNC:8565UniProt: G3V4T2
234PubMed Papers
21Diseases
0Drugs
11Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Trending
CLINICAL
OMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
nuclear inclusion bodyribonucleoprotein complexprotein bindingpoly(A)+ mRNA export from nucleusoculopharyngeal muscular dystrophy 1oculopharyngeal muscular dystrophygenetic disorderinfluenza
✦AI Summary

PABPN1 is a nuclear RNA-binding protein that plays critical roles in mRNA 3'-end processing and quality control. The protein stimulates poly(A) polymerase activity and controls poly(A) tail length during mRNA maturation 1. PABPN1 facilitates splicing of terminal introns, particularly those with weak 3' splice sites, through a poly(A) tail-dependent mechanism involving recruitment of splicing factors like RBM26/27 1. The protein also prevents nuclear export of incompletely spliced mRNAs containing retained introns, functioning as a quality control mechanism independent of nuclear RNA decay pathways 2. PABPN1 regulates alternative polyadenylation (APA) by suppressing proximal polyadenylation site usage, with reduced PABPN1 levels leading to APA-shifts that primarily affect muscle transcripts 3. Disease-causing alanine expansions in PABPN1 lead to oculopharyngeal muscular dystrophy (OPMD), where the mutant protein forms nuclear aggregates containing chaperones like HSP70 and novel components including GRP78/BiP, RPL24, and p62 4. The pathogenesis involves both toxic gain-of-function from aggregates and loss-of-function effects, with APA-shifts correlating with reduced expression of specific PABPN1 isoforms rather than aggregate formation 3. PABPN1 also demonstrates oncogenic properties in hepatocellular carcinoma through modulation of complement component C5 and NF-ΞΊB signaling 5.

Sources cited
1
PABPN1 facilitates splicing of terminal introns with weak 3' splice sites through poly(A) tail-dependent recruitment of RBM26/27
PMID: 37661812
2
PABPN1 prevents nuclear export of incompletely spliced mRNAs with retained introns as a quality control mechanism
PMID: 36754576
3
PABPN1 suppresses alternative polyadenylation and loss-of-function causes APA-shifts affecting muscle transcripts in OPMD
PMID: 38213032
4
Disease-causing PABPN1 forms nuclear aggregates containing HSP70, GRP78/BiP, RPL24, and p62 in OPMD patients
PMID: 36197469
5
PABPN1 promotes hepatocellular carcinoma progression through modulation of C5 and NF-ΞΊB signaling
PMID: 40721660
Disease Associationsβ“˜21
oculopharyngeal muscular dystrophy 1Open Targets
0.64Moderate
oculopharyngeal muscular dystrophyOpen Targets
0.61Moderate
genetic disorderOpen Targets
0.41Moderate
influenzaOpen Targets
0.37Weak
dengue diseaseOpen Targets
0.37Weak
cancerOpen Targets
0.08Suggestive
breast cancerOpen Targets
0.08Suggestive
Distal myopathy, Nonaka typeOpen Targets
0.07Suggestive
Proximal spinal muscular atrophy type 4Open Targets
0.06Suggestive
spinal muscular atrophy, type IVOpen Targets
0.06Suggestive
myopathy, distal, 5Open Targets
0.06Suggestive
colorectal carcinomaOpen Targets
0.06Suggestive
autosomal recessive limb-girdle muscular dystrophy type 2LOpen Targets
0.06Suggestive
Autosomal recessive limb-girdle muscular dystrophy due to ISPD deficiencyOpen Targets
0.06Suggestive
Scapuloperoneal spinal muscular atrophyOpen Targets
0.06Suggestive
distal myopathyOpen Targets
0.06Suggestive
autosomal recessive limb-girdle muscular dystrophy type 2GOpen Targets
0.06Suggestive
GNE myopathyOpen Targets
0.06Suggestive
myopathy, sarcoplasmic bodyOpen Targets
0.06Suggestive
myopathy, distal, 6, adult-onset, autosomal dominantOpen Targets
0.06Suggestive
Oculopharyngeal muscular dystrophy 1UniProt
Pathogenic Variants11
NM_004643.3(PABPN1):c.3GGC[10] (p.Ala9_Ala11dup)Pathogenic
not provided|Oculopharyngeal muscular dystrophy|Inborn genetic diseases|Oculopharyngeal muscular dystrophy 1
β˜…β˜…β˜†β˜†2025β†’ Residue 9
NM_004643.4(PABPN1):c.3GGC[9] (p.Ala11_Gly12insAlaAla)Pathogenic
not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 11
NM_004643.4(PABPN1):c.3GGC[12] (p.Ala11_Gly12insAlaAlaAlaAlaAla)Pathogenic
Oculopharyngeal muscular dystrophy|not provided|Oculopharyngeal muscular dystrophy 1
β˜…β˜…β˜†β˜†2025β†’ Residue 11
NM_004643.4(PABPN1):c.18_26dup (p.Ala11_Gly12insAlaAlaAla)Pathogenic
not provided|Oculopharyngeal muscular dystrophy 1
β˜…β˜…β˜†β˜†2025β†’ Residue 11
NM_004643.4(PABPN1):c.15_26dup (p.Ala11_Gly12insAlaAlaAlaAla)Pathogenic
Oculopharyngeal muscular dystrophy|not provided
β˜…β˜…β˜†β˜†2024β†’ Residue 11
NM_004643.4(PABPN1):c.3GGC[13] (p.Ala11_Gly12insAlaAlaAlaAlaAlaAla)Pathogenic
Oculopharyngeal muscular dystrophy 1
β˜…β˜†β˜†β˜†2025β†’ Residue 11
NM_004643.4(PABPN1):c.9_26dup (p.Ala11_Gly12insAlaAlaAlaAlaAlaAla)Likely pathogenic
Oculopharyngeal muscular dystrophy 1
β˜…β˜†β˜†β˜†2025β†’ Residue 11
NM_004643.4(PABPN1):c.21_26dup (p.Ala11_Gly12insAlaAla)Pathogenic
Oculopharyngeal muscular dystrophy 1
β˜…β˜†β˜†β˜†2025β†’ Residue 11
NM_004643.4(PABPN1):c.20_34dup (p.Ala11_Gly12insAlaAlaAlaAlaAla)Pathogenic
not provided
β˜…β˜†β˜†β˜†2019β†’ Residue 11
NM_004643.4(PABPN1):c.23_24insGGCGGCAGC (p.Ala11_Gly12insAlaAlaAla)Pathogenic
not provided
β˜…β˜†β˜†β˜†2018β†’ Residue 11
NM_004643.4(PABPN1):c.3_23= (p.Met1_Ala8=)Pathogenic
Oculopharyngeal muscular dystrophy 1
β˜†β˜†β˜†β˜†1998β†’ Residue 1
View on ClinVar β†—
Related Genes
CPSF1Protein interaction100%SYMPKProtein interaction100%MTREXProtein interaction100%CSTF1Protein interaction99%CSTF2Protein interaction99%CSTF3Protein interaction99%
Tissue Expression6 tissues
Liver
100%
Ovary
85%
Bone Marrow
81%
Lung
64%
Brain
32%
Heart
30%
Gene Interaction Network
Click a node to explore
PABPN1CPSF1SYMPKMTREXCSTF1CSTF2CSTF3
PROTEIN STRUCTURE
Preparing viewer…
PDB3UCG Β· 1.95 Γ… Β· X-ray
View on RCSB β†—
Constraintβ“˜
LOEUFβ“˜
0.37Moderately Constrained
pLIβ“˜
1.00Intolerant
Observed/Expected LoF0.18 [0.09–0.37]
RankingsWhere PABPN1 stands among ~20K protein-coding genes
  • #1,703of 20,598
    Most Researched234 Β· top 10%
  • #2,731of 5,498
    Most Pathogenic Variants11
  • #1,701of 17,882
    Most Constrained (LOEUF)0.37 Β· top 10%
Genes detectedPABPN1
Sources retrieved26 papers
Response timeβ€”
πŸ“„ Sources
26β–Ό
1
A 20-year Clinical and Genetic Neuromuscular Cohort Analysis in Lebanon: An International Effort.
PMID: 34602496
J Neuromuscul Dis Β· 2022
1.00
2
Assessment of PABPN1 nuclear inclusions on a large cohort of patients and in a human xenograft model of oculopharyngeal muscular dystrophy.
PMID: 36197469
Acta Neuropathol Β· 2022
0.90
3
BiFC and FACS-based CRISPR screening revealed that QKI promotes PABPN1 LLPS in colorectal cancer cells.
PMID: 40052530
Protein Cell Β· 2025
0.80
4
PABPN1 as a pan-cancer biomarker: prognostic significance and association with tumor immune microenvironment.
PMID: 40607380
Front Immunol Β· 2025
0.76
5
Targeting PGE2 mediated senescent neuron improves tumor therapy.
PMID: 39963753
Neuro Oncol Β· 2025
0.70