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10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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PCDHA9
protocadherin alpha 9
Chromosome 5 · 5q31.3
NCBI Gene: 9752Ensembl: ENSG00000204961.7HGNC: HGNC:8675UniProt: Q9Y5H5
17PubMed Papers
0Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
cell adhesionplasma membranecell adhesion molecule bindingmembrane
✦AI Summary

PCDHA9 (protocadherin alpha 9) is a calcium-dependent cell adhesion protein involved in establishing and maintaining neuronal connections 1. It localizes to the plasma membrane and mediates cell adhesion through calcium-dependent interactions [GO annotations cited in abstracts]. Mechanistically, PCDHA9 functions in cell adhesion and synapse organization. In the enteric nervous system, PCDHA9 is expressed in the myenteric plexus and regulates enteric neuron proliferation and apoptosis 2. At the neuromuscular junction, PCDHA9 mutations impair NKA-α1 expression and disrupt ion transport and neuronal survival 1. PCDHA9 dysfunction is implicated in multiple diseases. Homozygous mutations cause progressive motor neuron degeneration with TDP-43 pathology and paralysis in mice 1. Heterozygous mutations contribute to hypoplastic left heart syndrome and bicuspid aortic valve through disrupted aortic development 3. PCDHA9 mutations are also associated with Hirschsprung's disease 2, short root anomaly in tooth development 4, and reduced male fertility through microRNA-23a/b-3p regulation 5. Additionally, PCDHA9 downregulation correlates with poor prostate cancer prognosis 6. Clinically, PCDHA9 variants represent a genetic risk factor across neurodevelopmental, cardiac, and reproductive disorders, suggesting therapeutic potential through restoration of adhesion-mediated signaling.

Sources cited
1
PCDHA9 mutations cause motor neuron degeneration, neuromuscular junction abnormalities, and impaired ion transport/synapse organization
PMID: 38467605
2
microRNA-23a/b-3p directly targets PCDHA9 and reduced PCDHA9 expression correlates with impaired male fertility
PMID: 37372085
3
Pcdha9 mutations contribute to neurodevelopmental deficits and autism-like behavior in the context of cardiac disease
PMID: 39774941
4
PCDHA9 is downregulated in prostate cancer and serves as an independent prognostic factor
PMID: 37610864
5
PCDHA9 mutations are associated with Hirschsprung's disease; expressed in myenteric plexus and regulates neuronal proliferation/apoptosis
PMID: 29477871
6
Pcdha9 mutations impair placental development and fetal growth in hypoplastic left heart syndrome model
PMID: 34890862
7
PCDHA9 gene cluster variants are associated with short root anomaly in tooth development
PMID: 40988636
8
Pcdha9 mutation alone causes bicuspid aortic valve and aortic hypoplasia; digenic interaction with chromatin modifier causes HLHS
PMID: 36053093
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
PCDH10Shared pathway100%PCDHA1Shared pathway100%PCDHA2Shared pathway100%PCDHA3Shared pathway100%PCDHA5Shared pathway100%PCDHA6Shared pathway100%
Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network
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PCDHA9PCDH10PCDHA1PCDHA2PCDHA3PCDHA5PCDHA6
PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9Y5H5
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
1.23LoF Tolerant
pLIⓘ
0.00Tolerant
Observed/Expected LoF0.99 [0.80–1.23]
RankingsWhere PCDHA9 stands among ~20K protein-coding genes
  • #15,090of 20,598
    Most Researched17
  • #12,944of 17,882
    Most Constrained (LOEUF)1.23
Genes detectedPCDHA9
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
PCDHA9 as a candidate gene for amyotrophic lateral sclerosis.
PMID: 38467605
Nat Commun · 2024
1.00
2
Towards a More Comprehensive Picture of the MicroRNA-23a/b-3p Impact on Impaired Male Fertility.
PMID: 37372085
Biology (Basel) · 2023
0.90
3
Mitotic block and epigenetic repression underlie neurodevelopmental defects and neurobehavioral deficits in congenital heart disease.
PMID: 39774941
Nat Commun · 2025
0.80
4
A Prognostic Model for Prostate Cancer Patients Based on Two DNA Damage Response Mutation-Related Immune Genes.
PMID: 37610864
Cancer Biother Radiopharm · 2024
0.70
5
Identification of two novel PCDHA9 mutations associated with Hirschsprung's disease.
PMID: 29477871
Gene · 2018
0.60