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10 sources retrieved · Most recent: April 2026 · Index updated 14 days ago
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PCF11
PCF11 cleavage and polyadenylation factor subunit
Chromosome 11 · 11q14.1
NCBI Gene: 51585Ensembl: ENSG00000165494.12HGNC: HGNC:30097UniProt: A0A8I5KX04
71PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
RNA polymerase II complex bindingnucleusnucleoplasmtermination of RNA polymerase II transcriptiondengue diseasesialolithiasismediastinal germ cell tumoracute megakaryoblastic leukaemia
✦AI Summary

PCF11 is a critical component of the pre-mRNA cleavage and polyadenylation complex that plays essential roles in RNA polymerase II transcription termination and mRNA 3'-end processing 1. As a scaffold protein, PCF11 facilitates transcription termination by directly binding to the RNA polymerase II C-terminal domain and promoting dissociation of elongating polymerase from DNA 2. PCF11 functions in collaboration with other factors including SPT6 and PNUTS to regulate transcription termination at both gene ends 3. The protein exhibits dual regulatory functions depending on gene architecture: it enhances termination of short genes while suppressing intronic polyadenylation in long genes, thereby modulating gene expression based on gene size 4. PCF11 serves as a specific reader for the m6Am RNA modification, where m6Am sequesters PCF11 away from RNA polymerase II to suppress premature termination 5. In disease contexts, PCF11 regulation is crucial for neuroblastoma differentiation, where downregulation promotes neurodifferentiation programs and associates with favorable outcomes 6. PCF11's autoregulatory mechanisms maintain homeostasis of polyadenylation site usage, and its dysregulation contributes to cancer vulnerabilities through altered intron retention patterns 7.

Sources cited
1
PCF11 is a component of pre-mRNA cleavage complex that promotes RNA polymerase II transcription termination and requires intact pA signal for function
PMID: 18086705
2
PCF11 directly binds RNA polymerase II C-terminal domain, dismantles elongating polymerase, and is essential for vertebrate development
PMID: 30819644
3
PCF11 collaborates with SPT6 and PNUTS in regulating transcription termination with distinct and overlapping functions
PMID: 40103229
4
PCF11 modulates gene expression based on gene size through differential effects on short versus long genes via intronic polyadenylation
PMID: 30840896
5
PCF11 functions as a specific reader for m6Am RNA modification and is sequestered to suppress premature transcription termination
PMID: 39481383
6
PCF11 downregulation induces neurodifferentiation programs and low PCF11 levels associate with favorable neuroblastoma outcomes
PMID: 30552333
7
PCF11 dysregulation contributes to intron retention patterns that represent actionable vulnerabilities in advanced prostate cancer
PMID: 38413979
Disease Associationsⓘ20
dengue diseaseOpen Targets
0.37Weak
sialolithiasisOpen Targets
0.16Weak
acute megakaryoblastic leukaemiaOpen Targets
0.11Weak
mediastinal germ cell tumorOpen Targets
0.11Weak
neuroblastomaOpen Targets
0.08Suggestive
neoplasmOpen Targets
0.04Suggestive
cystOpen Targets
0.03Suggestive
insomniaOpen Targets
0.02Suggestive
smoking initiationOpen Targets
0.02Suggestive
placental retentionOpen Targets
0.02Suggestive
oral squamous cell carcinomaOpen Targets
0.02Suggestive
cancerOpen Targets
0.02Suggestive
breast cancerOpen Targets
0.01Suggestive
pachyonychia congenitaOpen Targets
0.01Suggestive
bladder transitional cell carcinomaOpen Targets
0.01Suggestive
COVID-19Open Targets
0.01Suggestive
Haim-Munk syndromeOpen Targets
0.01Suggestive
acute respiratory distress syndromeOpen Targets
0.01Suggestive
colorectal carcinomaOpen Targets
0.00Suggestive
infectious diseaseOpen Targets
0.00Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes
POLR2BProtein interaction100%POLR2EProtein interaction100%POLR2FProtein interaction100%POLR2IProtein interaction100%GTF2BProtein interaction100%CPSF2Protein interaction99%
Tissue Expression6 tissues
Bone Marrow
100%
Ovary
67%
Lung
61%
Liver
40%
Heart
35%
Brain
29%
Gene Interaction Network
Click a node to explore
PCF11POLR2BPOLR2EPOLR2FPOLR2IGTF2BCPSF2
PROTEIN STRUCTURE
Preparing viewer…
PDB6WJH · 2.19 Å · X-ray
View on RCSB ↗
RankingsWhere PCF11 stands among ~20K protein-coding genes
  • #6,659of 20,598
    Most Researched71
Genes detectedPCF11
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
Overlapping and distinct functions of SPT6, PNUTS, and PCF11 in regulating transcription termination.
PMID: 40103229
Nucleic Acids Res · 2025
1.00
2
m
PMID: 39481383
Mol Cell · 2024
0.90
3
Human Pcf11 enhances degradation of RNA polymerase II-associated nascent RNA and transcriptional termination.
PMID: 18086705
Nucleic Acids Res · 2008
0.80
4
Selective Roles of Vertebrate PCF11 in Premature and Full-Length Transcript Termination.
PMID: 30819644
Mol Cell · 2019
0.70
5
Regulation of Intronic Polyadenylation by PCF11 Impacts mRNA Expression of Long Genes.
PMID: 30840896
Cell Rep · 2019
0.60