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GeneE
10 sources retrieved · Most recent: April 2026 · Index updated 15 days ago
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PCYT1B
phosphate cytidylyltransferase 1B, choline
Chromosome X · Xp22.11
NCBI Gene: 9468Ensembl: ENSG00000102230.14HGNC: HGNC:8755UniProt: Q9Y5K3
27PubMed Papers
20Diseases
0Drugs
0Pathogenic Variants
DATA QUALITY
✓ Experimental GO Evidence✓ Swiss-Prot Reviewed
phosphatidylcholine biosynthetic processendoplasmic reticulumCDP-choline pathwaycholine-phosphate cytidylyltransferase activityneuroinflammatory disordermajor depressive disordermusculoskeletal system diseasedysthymic disorder
✦AI Summary

PCYT1B catalyzes the rate-limiting step of the CDP-choline (Kennedy) pathway for phosphatidylcholine (PC) biosynthesis 1. Located on the endoplasmic reticulum, this choline-phosphate cytidylyltransferase converts choline phosphate to CDP-choline, a critical intermediate in PC synthesis 1. Mechanistically, PCYT1B functions downstream of p53 in regulating lipid droplet (LD) homeostasis. During choline depletion, p53 upregulates PCYT1B to direct available choline toward PC biosynthesis, preventing LD coalescence and excessive fatty acid mobilization 1. Loss of p53 impairs this response, leading to dysregulated choline metabolism, LD expansion, and hepatic steatosis 1. Clinically, PCYT1B variants have been investigated in neonatal respiratory distress syndrome (RDS), where PC deficiency in pulmonary surfactant contributes to pathology. However, studies in Chinese Han populations found no significant association between PCYT1B mutations and RDS susceptibility 23. A rare Xp22.11 deletion affecting PCYT1B was associated with craniosynostosis and periventricular nodular heterotopia in one male patient 4. PCYT1B has also been identified as a candidate gene in galactose-induced cataract formation, though expression changes remain unclear 5. These findings underscore PCYT1B's essential role in PC-dependent lipid metabolism and tumor suppression pathways.

Sources cited
1
PCYT1B catalyzes the rate-limiting step of the Kennedy pathway for PC biosynthesis; p53 upregulates PCYT1B during choline starvation to prevent lipid droplet coalescence and tumorigenesis
PMID: 38194288
2
PCYT1B variants show low frequency in southern Chinese newborns with no evidence of contribution to respiratory distress syndrome disease burden
PMID: 29411327
3
PCYT1B mutations were not found to be overrepresented in respiratory distress syndrome cases
PMID: 23166334
4
Rare Xp22.11 deletion affecting PCYT1B was associated with craniosynostosis and periventricular nodular heterotopia
PMID: 22052819
5
PCYT1B was identified as a candidate gene in galactose-induced cataract formation in rat models
PMID: 40027191
Disease Associationsⓘ20
neuroinflammatory disorderOpen Targets
0.27Weak
major depressive disorderOpen Targets
0.26Weak
musculoskeletal system diseaseOpen Targets
0.26Weak
dysthymic disorderOpen Targets
0.24Weak
mental or behavioural disorderOpen Targets
0.19Weak
Back painOpen Targets
0.18Weak
PainOpen Targets
0.18Weak
response to xenobiotic stimulusOpen Targets
0.18Weak
hepatocellular carcinomaOpen Targets
0.11Weak
nervous system diseaseOpen Targets
0.11Weak
cancerOpen Targets
0.10Suggestive
neoplasmOpen Targets
0.10Suggestive
diabetes mellitusOpen Targets
0.09Suggestive
primary ovarian insufficiencyOpen Targets
0.09Suggestive
46,XX gonadal dysgenesisOpen Targets
0.09Suggestive
Abdominal painOpen Targets
0.08Suggestive
HeadacheOpen Targets
0.08Suggestive
Limb painOpen Targets
0.08Suggestive
pulmonary tuberculosisOpen Targets
0.08Suggestive
gestational diabetesOpen Targets
0.08Suggestive
Pathogenic Variants
No pathogenic variants reported on ClinVar for this gene.
View on ClinVar ↗
Related Genes

No related genes found for this gene.

Tissue Expression

No tissue expression data available for this gene.

Gene Interaction Network

No interaction data available for this gene.

PROTEIN STRUCTURE
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AlphaFoldAI-predicted · UniProt Q9Y5K3
View on AlphaFold ↗
Constraintⓘ
LOEUFⓘ
0.64LoF Tolerant
pLIⓘ
0.56Intermediate
Observed/Expected LoF0.38 [0.23–0.64]
RankingsWhere PCYT1B stands among ~20K protein-coding genes
  • #12,635of 20,598
    Most Researched27
  • #4,605of 17,882
    Most Constrained (LOEUF)0.64
Genes detectedPCYT1B
Sources retrieved10 papers
Response time—
📄 Sources
10▼
1
p53 suppresses lipid droplet-fueled tumorigenesis through phosphatidylcholine.
PMID: 38194288
J Clin Invest · 2024
1.00
2
Genetic Polymorphisms of LPCAT1, CHPT1 and PCYT1B and Risk of Neonatal Respiratory Distress Syndrome among a Chinese Han Population.
PMID: 31964590
Pediatr Neonatol · 2020
0.90
3
Galactose-Induced Cataracts in Rats: A Machine Learning Analysis.
PMID: 40027191
Int J Med Sci · 2025
0.80
4
[Pulmonary surfactant associated gene variants in mixed ethnic population of Han and Zhuang].
PMID: 23302616
Zhonghua Er Ke Za Zhi · 2012
0.70
5
Gene variants of the phosphatidylcholine synthesis pathway do not contribute to RDS in the Chinese population.
PMID: 29411327
World J Pediatr · 2018
0.60