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GeneE
10 sources retrieved Β· Most recent: April 2026 Β· Index updated 14 days ago
β“˜GeneE is for informational purposes only. It is not a substitute for professional medical advice, diagnosis, or treatment.
PDE6B
phosphodiesterase 6B
Chromosome 4 Β· 4p16.3
NCBI Gene: 5158Ensembl: ENSG00000133256.13HGNC: HGNC:8786UniProt: B4DHV7
60PubMed Papers
22Diseases
2Drugs
171Pathogenic Variants
FUNCTIONAL ROLE
Hub Gene
RESEARCH IMPACT
Variant-Rich
CLINICAL
FDA Approved TargetOMIM Disease Gene
DATA QUALITY
βœ“ Experimental GO Evidenceβœ“ Swiss-Prot Reviewed
3',5'-cyclic-GMP phosphodiesterase activityvisual perceptionrod photoreceptor phosphodiesterase 6 complexphotoreceptor outer segment membraneretinitis pigmentosacongenital stationary night blindnessRetinal dystrophycoronary artery disease
✦AI Summary

PDE6B (phosphodiesterase 6B) is a rod-specific cGMP phosphodiesterase that catalyzes hydrolysis of 3',5'-cyclic GMP, essential for phototransduction and visual signal transmission 1. The enzyme is necessary for forming functional phosphodiesterase holoenzyme complexes and participates in retinal circadian rhythm photoentrainment via modulation of light-induced phase-shifts 1. Pathogenic variants in PDE6B cause autosomal recessive retinitis pigmentosa (RP), a progressive photoreceptor degeneration disease accounting for 2-5% of all RP cases 2. PDE6B mutations are particularly prevalent in early-onset RP, being the most common causative gene in patients experiencing initial symptoms within their first decade 3. The gene is also implicated in congenital stationary night blindness. Clinically, PDE6B-associated RP presents with classic features including attenuated retinal blood vessels, intraretinal pigmentation, and optic disc changes 2. Large genetic screening studies across Asian populations identified multiple pathogenic variants, including East Asian-specific variants 4. Emerging gene therapies show promise: prime editing systems targeting PDE6B nonsense mutations demonstrated 26.47% editing efficiency and protected rod cells from degeneration in preclinical models 5, while AAV5-mediated PDE6B gene delivery preserved photoreceptor structure and improved visual function in knockout rats 6.

Sources cited
1
PDE6B encodes a phototransduction protein; rod-specific cGMP phosphodiesterase function and involvement in retinal circadian photoentrainment
PMID: 40013354
2
PDE6B genes (including PDE6B) have higher prevalence (~2-5% of all RP cases); autosomal recessive RP accounts for 15-20% of all RP cases with classic clinical features
PMID: 30578498
3
PDE6B was the most common causative gene in Korean RP patients with symptom onset in first decade (4.7% overall mutation detection rate)
PMID: 33946315
4
PDE6B East Asian-specific variant p.(Ile535Asn) found in β‰₯10 Japanese RP patients; confirms pathogenic role in RP
PMID: 31213501
5
Prime editing targeting PDE6B Y347X mutation achieved 26.47% editing efficiency, restored PDE6B protein expression, protected rod cells, and improved visual function in rd1 RP mouse model
PMID: 40064881
6
AAV5-mediated PDE6B gene delivery preserved photoreceptor structure, improved retinal morphology, and significantly improved visual function in PDE6B knockout rats
PMID: 40384764
7
PDE6B identified as disease-causing gene in Chinese Usher syndrome/retinal degeneration patients through comprehensive molecular screening
PMID: 29625443
8
PDE6B confirmed as pathogenic gene in Chinese families with retinitis pigmentosa through targeted panel and whole exome sequencing
PMID: 31960602
Disease Associationsβ“˜22
retinitis pigmentosaOpen Targets
0.82Strong
congenital stationary night blindnessOpen Targets
0.69Moderate
Retinal dystrophyOpen Targets
0.58Moderate
coronary artery diseaseOpen Targets
0.54Moderate
strokeOpen Targets
0.54Moderate
autosomal recessive retinitis pigmentosaOpen Targets
0.49Moderate
Posterior column ataxia - retinitis pigmentosaOpen Targets
0.41Moderate
cardiovascular diseaseOpen Targets
0.39Weak
inherited retinal dystrophyOpen Targets
0.37Weak
hypertensionOpen Targets
0.37Weak
intermittent vascular claudicationOpen Targets
0.37Weak
Recurrent thrombophlebitisOpen Targets
0.37Weak
Cone rod dystrophyOpen Targets
0.37Weak
cone-rod dystrophyOpen Targets
0.36Weak
Leber congenital amaurosisOpen Targets
0.36Weak
chronic kidney diseaseOpen Targets
0.35Weak
oculocutaneous albinism type 2Open Targets
0.34Weak
Hepatitis, AlcoholicOpen Targets
0.33Weak
Neonatal sepsisOpen Targets
0.32Weak
non-alcoholic steatohepatitisOpen Targets
0.31Weak
Night blindness, congenital stationary, autosomal dominant 2UniProt
Retinitis pigmentosa 40UniProt
Pathogenic Variants171
NM_000283.4(PDE6B):c.621+1G>ALikely pathogenic
not provided|Retinitis pigmentosa 40
β˜…β˜…β˜†β˜†2026
NM_000283.4(PDE6B):c.1133G>A (p.Trp378Ter)Pathogenic
not provided|Retinitis pigmentosa 40
β˜…β˜…β˜†β˜†2026β†’ Residue 378
NM_000283.4(PDE6B):c.1540del (p.Leu514fs)Pathogenic
not provided|Retinitis pigmentosa 40|Autosomal recessive retinitis pigmentosa;Congenital Stationary Night Blindness, Dominant|PDE6B-related disorder
β˜…β˜…β˜†β˜†2026β†’ Residue 514
NM_000283.4(PDE6B):c.2326G>A (p.Asp776Asn)Pathogenic
not provided|Retinitis pigmentosa 40|Retinal dystrophy
β˜…β˜…β˜†β˜†2026β†’ Residue 776
NM_000283.4(PDE6B):c.2197G>C (p.Ala733Pro)Pathogenic
not provided|Retinitis pigmentosa 40
β˜…β˜…β˜†β˜†2026β†’ Residue 733
NM_000283.4(PDE6B):c.1712C>T (p.Thr571Met)Likely pathogenic
Retinal dystrophy|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 571
NM_000283.4(PDE6B):c.892C>T (p.Gln298Ter)Pathogenic
Retinitis pigmentosa 40|Retinitis pigmentosa|not provided|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 298
NM_000283.4(PDE6B):c.1655G>A (p.Arg552Gln)Pathogenic
not provided|Retinal dystrophy|PDE6B-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 552
NM_000283.4(PDE6B):c.1798G>A (p.Asp600Asn)Pathogenic
not provided|Congenital stationary night blindness autosomal dominant 2|Retinitis pigmentosa 40
β˜…β˜…β˜†β˜†2025β†’ Residue 600
NM_000283.4(PDE6B):c.1682A>G (p.His561Arg)Likely pathogenic
Retinitis pigmentosa 40|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 561
NM_000283.4(PDE6B):c.1107+3A>GPathogenic
Retinitis pigmentosa|not provided|Retinal dystrophy|Retinitis pigmentosa 40|PDE6B-related disorder
β˜…β˜…β˜†β˜†2025
NM_000283.4(PDE6B):c.2353-18_2354delLikely pathogenic
not provided|Retinal dystrophy
β˜…β˜…β˜†β˜†2025
NM_000283.4(PDE6B):c.1678C>T (p.Arg560Cys)Pathogenic
Retinitis pigmentosa 40|Retinitis pigmentosa|Retinal dystrophy|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 560
NM_000283.4(PDE6B):c.1954C>T (p.Gln652Ter)Pathogenic
Retinal dystrophy|not provided|Retinitis pigmentosa|Retinitis pigmentosa 40|Retinitis pigmentosa 40;Congenital stationary night blindness autosomal dominant 2
β˜…β˜…β˜†β˜†2025β†’ Residue 652
NM_000283.4(PDE6B):c.1860del (p.His620fs)Pathogenic
not provided|Retinal dystrophy|Retinitis pigmentosa 40
β˜…β˜…β˜†β˜†2025β†’ Residue 620
NM_000283.4(PDE6B):c.291C>A (p.Tyr97Ter)Pathogenic
Retinitis pigmentosa|Retinal dystrophy|not provided
β˜…β˜…β˜†β˜†2025β†’ Residue 97
NM_000283.4(PDE6B):c.810C>A (p.Cys270Ter)Pathogenic
not provided|Retinal dystrophy|Autosomal recessive retinitis pigmentosa|Retinitis pigmentosa|See cases
β˜…β˜…β˜†β˜†2025β†’ Residue 270
NM_000283.4(PDE6B):c.1923_1969delinsTCTGGG (p.Asn643fs)Pathogenic
Retinitis pigmentosa 40|Retinitis pigmentosa|not provided|PDE6B-related disorder
β˜…β˜…β˜†β˜†2025β†’ Residue 643
NM_000283.4(PDE6B):c.1670A>G (p.His557Arg)Likely pathogenic
Progressive cone dystrophy (without rod involvement)|Rod-cone dystrophy|Retinitis pigmentosa 40|Retinal dystrophy
β˜…β˜…β˜†β˜†2025β†’ Residue 557
NM_000283.4(PDE6B):c.610G>T (p.Glu204Ter)Pathogenic
not provided|Retinitis pigmentosa 40
β˜…β˜…β˜†β˜†2025β†’ Residue 204
View on ClinVar β†—
Drug Targets2
DIPYRIDAMOLEApproved
3',5'-cyclic phosphodiesterase inhibitor
coronary artery disease
PENTOXIFYLLINEApproved
Adenosine A2 receptor antagonist
cardiovascular disease
Related Genes
ADCY2Protein interaction98%GMPRProtein interaction98%GUCY1A2Protein interaction98%GUCY1A1Protein interaction98%GUCY1B1Protein interaction98%GUCY2CProtein interaction98%
Tissue Expression6 tissues
Bone Marrow
100%
Brain
42%
Heart
27%
Ovary
19%
Lung
12%
Liver
4%
Gene Interaction Network
Click a node to explore
PDE6BADCY2GMPRGUCY1A2GUCY1A1GUCY1B1GUCY2C
PROTEIN STRUCTURE
Preparing viewer…
AlphaFoldAI-predicted Β· UniProt P35913
View on AlphaFold β†—
Constraintβ“˜
LOEUFβ“˜
1.24LoF Tolerant
pLIβ“˜
0.00Tolerant
Observed/Expected LoF1.02 [0.85–1.24]
RankingsWhere PDE6B stands among ~20K protein-coding genes
  • #7,692of 20,598
    Most Researched60
  • #649of 1,025
    FDA-Approved Drug Targets2
  • #437of 5,498
    Most Pathogenic Variants171 Β· top 10%
  • #13,050of 17,882
    Most Constrained (LOEUF)1.24
Genes detectedPDE6B
Sources retrieved10 papers
Response timeβ€”
πŸ“„ Sources
10β–Ό
1
Genetic characteristics of retinitis pigmentosa in 1204 Japanese patients.
PMID: 31213501
J Med Genet Β· 2019
1.00
2
Comprehensive Molecular Screening in Chinese Usher Syndrome Patients.
PMID: 29625443
Invest Ophthalmol Vis Sci Β· 2018
0.90
3
PMID: 20301590
0.80
4
Diverse Genetic Landscape of Suspected Retinitis Pigmentosa in a Large Korean Cohort.
PMID: 33946315
Genes (Basel) Β· 2021
0.70
5
In vivo prime editing rescues photoreceptor degeneration in nonsense mutant retinitis pigmentosa.
PMID: 40064881
Nat Commun Β· 2025
0.60